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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS27165 and QEN71_RS27170 are separated by 141 nucleotides
QEN71_RS27170 and QEN71_RS27175 are separated by 3 nucleotides
QEN71_RS27175 and QEN71_RS27180 are separated by 81 nucleotides
QEN71_RS27180 and QEN71_RS27185 are separated by 93 nucleotides
QEN71_RS27165: QEN71_RS27165 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 6,057,358 to 6,057,825
_RS27165
QEN71_RS27170: QEN71_RS27170 - acetyl-CoA carboxylase biotin carboxylase subunit, at 6,057,967 to 6,059,334
_RS27170
QEN71_RS27175: QEN71_RS27175 - 50S ribosomal protein L11 methyltransferase, at 6,059,338 to 6,060,240
_RS27175
QEN71_RS27180: QEN71_RS27180 - DUF3426 domain-containing protein, at 6,060,322 to 6,062,085
_RS27180
QEN71_RS27185: QEN71_RS27185 - thiol peroxidase, at 6,062,179 to 6,062,679
_RS27185
Group
Condition
QEN71
_RS27165
QEN71
_RS27170
QEN71
_RS27175
QEN71
_RS27180
QEN71
_RS27185
carbon source
L-Histidine (C)
N.D.
N.D.
-0.3
-0.7
-0.3
carbon source
L-Leucine (C)
N.D.
N.D.
-0.1
-0.7
-0.1
carbon source
L-Histidine (C)
N.D.
N.D.
-0.1
-1.1
+0.2
motility
Motility_inner_sample_with_outgrowth
N.D.
N.D.
+0.2
-0.3
-0.8
motility
Motility_outer_sample_with_outgrowth
N.D.
N.D.
-0.1
-0.8
+0.1
carbon source
D,L-Malic Acid (C)
N.D.
N.D.
+0.2
-0.2
-0.7
carbon source
L-Leucine (C)
N.D.
N.D.
-0.3
-0.2
-0.2
motility
Motility_outer_sample
N.D.
N.D.
-0.1
-0.7
+0.1
carbon source
casaminos (C)
N.D.
N.D.
+0.0
-0.3
-0.3
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
N.D.
N.D.
-0.0
-0.5
+0.0
supernatant
Filtered_supernatant_MT81_in_LB
N.D.
N.D.
+0.1
-0.5
-0.1
carbon source
2-Deoxy-D-Ribose (C)
N.D.
N.D.
-0.2
+0.4
-0.5
carbon source
Fumaric (C)
N.D.
N.D.
+0.2
-0.1
-0.4
motility
Motility_outer_sample
N.D.
N.D.
-0.2
-0.4
+0.5
stress
LB_noSalt with Chloride 200 mM
N.D.
N.D.
+0.3
-0.0
-0.5
carbon source
D-Xylose (C)
N.D.
N.D.
-0.1
-0.4
+0.5
carbon source
D-Fructose (C)
N.D.
N.D.
+0.0
+0.2
-0.3
coculture
Psabiae_ML3b with MT81
N.D.
N.D.
-0.1
+0.3
-0.3
stress
LB_noSalt with Zinc 0.5 mM
N.D.
N.D.
+0.4
-0.0
-0.4
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
N.D.
N.D.
+0.0
-0.3
+0.3
carbon source
L-Aspartic Acid (C)
N.D.
N.D.
+0.1
+0.3
-0.4
motility
Motility_outer_sample_with_outgrowth
N.D.
N.D.
+0.1
-0.3
+0.3
carbon source
L-Rhamnose (C)
N.D.
N.D.
-0.3
+0.2
+0.2
motility
Motility_inner_sample
N.D.
N.D.
-0.0
-0.2
+0.4
carbon source
Fumaric (C)
N.D.
N.D.
+0.1
-0.2
+0.4
stress
LB_noSalt with Zinc 0.5 mM
N.D.
N.D.
+0.4
+0.2
-0.3
carbon source
D,L-Malic Acid (C)
N.D.
N.D.
+0.3
+0.2
-0.1
carbon source
D-Fructose (C)
N.D.
N.D.
+0.1
+0.1
+0.4
carbon source
D-Sorbitol (C)
N.D.
N.D.
+0.1
+0.0
+0.5
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
N.D.
N.D.
+1.1
-0.7
+0.4
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