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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS25715 and QEN71_RS25720 are separated by 9 nucleotides
QEN71_RS25720 and QEN71_RS25725 are separated by 27 nucleotides
QEN71_RS25725 and QEN71_RS25730 overlap by 11 nucleotides
QEN71_RS25730 and QEN71_RS25735 are separated by 158 nucleotides
QEN71_RS25715: QEN71_RS25715 - acetyltransferase, at 5,730,361 to 5,731,038
_RS25715
QEN71_RS25720: QEN71_RS25720 - SAM-dependent methyltransferase, at 5,731,048 to 5,731,797
_RS25720
QEN71_RS25725: QEN71_RS25725 - ABC transporter ATP-binding protein, at 5,731,825 to 5,733,180
_RS25725
QEN71_RS25730: QEN71_RS25730 - ABC transporter permease, at 5,733,170 to 5,734,024
_RS25730
QEN71_RS25735: QEN71_RS25735 - glycosyltransferase family 2 protein, at 5,734,183 to 5,735,094
_RS25735
Group
Condition
QEN71
_RS25715
QEN71
_RS25720
QEN71
_RS25725
QEN71
_RS25730
QEN71
_RS25735
motility
Motility_outer_sample_with_outgrowth
-4.1
-3.2
-3.6
-4.2
-1.4
motility
Motility_outer_sample_with_outgrowth
-3.9
-3.0
-3.9
-4.1
-1.4
motility
Motility_outer_sample
-4.0
-3.1
-3.4
-4.2
-1.3
motility
Motility_outer_sample_with_outgrowth
-4.0
-3.2
-3.5
-3.9
-1.3
motility
Motility_outer_sample_with_outgrowth
-3.9
-3.2
-3.3
-4.1
-1.4
carbon source
D,L-Malic Acid (C)
-3.2
-3.0
-3.3
-4.3
-2.0
motility
Motility_outer_sample
-4.1
-3.3
-3.3
-3.3
-1.2
carbon source
succinate (C)
-2.7
-2.9
-3.0
-3.5
-1.6
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-2.6
-3.0
-3.0
-4.0
-1.1
carbon source
Fumaric (C)
-2.7
-3.0
-2.8
-3.6
-1.5
carbon source
L-Rhamnose (C)
-3.5
-2.9
-2.9
-3.5
-0.5
carbon source
D,L-Lactate (C)
-3.4
-2.8
-3.1
-2.4
-1.5
carbon source
succinate (C)
-3.4
-2.5
-3.1
-2.6
-1.6
carbon source
D,L-Malic Acid (C)
-2.7
-2.4
-3.5
-2.9
-1.7
carbon source
Fumaric (C)
-2.9
-2.7
-3.0
-2.7
-1.5
carbon source
D-Glucose (C)
-3.2
-2.8
-3.1
-3.2
-0.5
motility
Motility_inner_sample_with_outgrowth
-3.4
-2.8
-2.9
-2.5
-1.0
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-3.4
-2.3
-2.7
-2.8
-1.2
stress
LB_noSalt with Chloride 200 mM
-2.4
-2.6
-2.5
-3.1
-1.7
stress
LB_noSalt with Chloride 200 mM
-3.3
-2.2
-2.6
-2.3
-1.7
stress
LB_noSalt with Chloride 200 mM
-2.2
-2.7
-2.5
-3.0
-1.7
carbon source
D-Xylose (C)
-1.9
-2.8
-3.0
-3.7
-0.6
carbon source
L-Rhamnose (C)
-3.3
-2.5
-2.6
-2.9
-0.6
motility
Motility_inner_sample_with_outgrowth
-3.2
-2.6
-2.8
-2.3
-0.9
carbon source
D-Glucose (C)
-3.1
-2.8
-3.0
-2.3
-0.5
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-2.1
-2.2
-3.2
-3.1
-1.1
carbon source
D,L-Lactate (C)
-3.0
-2.3
-2.7
-2.2
-1.3
carbon source
D-Fructose (C)
-2.5
-2.7
-2.9
-2.8
-0.5
motility
Motility_inner_sample
-2.7
-2.4
-2.3
-3.1
-0.8
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-2.2
-2.0
-2.6
-3.0
-1.3
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