Fitness for 5 genes in Paraburkholderia sabiae LMG 24235

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500 ntQEN71_RS22210 and QEN71_RS22215 overlap by 4 nucleotidesQEN71_RS22215 and QEN71_RS22220 are separated by 39 nucleotidesQEN71_RS22220 and QEN71_RS22225 are separated by 105 nucleotidesQEN71_RS22225 and QEN71_RS22230 are separated by 203 nucleotides QEN71_RS22210: QEN71_RS22210 - peptidoglycan editing factor PgeF, at 4,931,124 to 4,931,963 _RS22210 QEN71_RS22215: QEN71_RS22215 - RluA family pseudouridine synthase, at 4,931,960 to 4,933,282 _RS22215 QEN71_RS22220: QEN71_RS22220 - outer membrane protein assembly factor BamD, at 4,933,322 to 4,934,179 _RS22220 QEN71_RS22225: QEN71_RS22225 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 4,934,285 to 4,935,589 _RS22225 QEN71_RS22230: QEN71_RS22230 - endonuclease/exonuclease/phosphatase family protein, at 4,935,793 to 4,936,656 _RS22230
Group Condition QEN71_RS22210 QEN71_RS22215 QEN71_RS22220 QEN71_RS22225 QEN71_RS22230
carbon source casaminos (C) -1.4 N.D. N.D. +0.1 +0.2
carbon source casaminos (C) -1.2 N.D. N.D. +0.2 +0.0
carbon source L-Aspartic Acid (C) -0.4 N.D. N.D. +0.0 -0.2
motility Motility_inner_sample -0.0 N.D. N.D. -0.3 -0.2
coculture Psabiae_ML3b with MT81 -0.1 N.D. N.D. -0.3 -0.1
motility Motility_inner_sample_with_outgrowth -0.1 N.D. N.D. -0.4 -0.0
motility Motility_inner_sample -0.2 N.D. N.D. -0.3 +0.0
carbon source L-Aspartic Acid (C) -0.4 N.D. N.D. +0.2 -0.1
supernatant Filtered_supernatant_MT183_in_LB -0.4 N.D. N.D. +0.1 -0.1
carbon source L-Glutamic (C) -0.2 N.D. N.D. +0.1 -0.2
carbon source L-Histidine (C) -0.4 N.D. N.D. +0.0 +0.1
carbon source D,L-Lactate (C) -0.4 N.D. N.D. +0.2 -0.0
supernatant Filtered_supernatant_MT81_in_LB -0.4 N.D. N.D. +0.0 +0.1
carbon source succinate (C) -0.5 N.D. N.D. +0.1 +0.2
in planta Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 N.D. N.D. -0.3 +0.1
coculture Psabiae_ML3b with MT80 +0.2 N.D. N.D. -0.1 -0.1
carbon source D-Glucose (C) -0.4 N.D. N.D. +0.2 +0.1
carbon source Fumaric (C) -0.3 N.D. N.D. +0.1 +0.1
carbon source D,L-Lactate (C) -0.3 N.D. N.D. +0.2 +0.0
carbon source L-Rhamnose (C) -0.5 N.D. N.D. +0.3 +0.1
stress LB_noSalt with Zinc 0.5 mM -0.2 N.D. N.D. +0.3 -0.1
carbon source D-Fructose (C) -0.1 N.D. N.D. +0.4 -0.1
carbon source L-Rhamnose (C) -0.2 N.D. N.D. +0.1 +0.3
stress LB_noSalt with Chloride 200 mM -0.1 N.D. N.D. +0.3 +0.1
stress LB_noSalt with Chloride 200 mM -0.3 N.D. N.D. +0.4 +0.1
motility Motility_outer_sample +0.4 N.D. N.D. +0.2 -0.1
motility Motility_outer_sample +0.2 N.D. N.D. +0.3 -0.1
stress LB_noSalt with Chloride 200 mM -0.2 N.D. N.D. +0.5 +0.2
motility Motility_outer_sample_with_outgrowth +0.4 N.D. N.D. -0.1 +0.1
motility Motility_outer_sample_with_outgrowth +0.4 N.D. N.D. +0.1 +0.1
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