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Cofit
Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS17645 and QEN71_RS17650 are separated by 11 nucleotides
QEN71_RS17650 and QEN71_RS17655 are separated by 32 nucleotides
QEN71_RS17655 and QEN71_RS17660 are separated by 82 nucleotides
QEN71_RS17660 and QEN71_RS17665 are separated by 123 nucleotides
QEN71_RS17645: QEN71_RS17645 - tryptophan synthase subunit beta, at 3,922,966 to 3,924,159
_RS17645
QEN71_RS17650: QEN71_RS17650 - site-specific DNA-methyltransferase, at 3,924,171 to 3,925,091
_RS17650
QEN71_RS17655: QEN71_RS17655 - tryptophan synthase subunit alpha, at 3,925,124 to 3,925,939
_RS17655
QEN71_RS17660: QEN71_RS17660 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 3,926,022 to 3,926,894
_RS17660
QEN71_RS17665: QEN71_RS17665 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 3,927,018 to 3,928,328
_RS17665
Group
Condition
QEN71
_RS17645
QEN71
_RS17650
QEN71
_RS17655
QEN71
_RS17660
QEN71
_RS17665
carbon source
casaminos (C)
-3.9
-2.3
-4.6
N.D.
N.D.
carbon source
D-Xylose (C)
-3.9
-1.8
-4.5
N.D.
N.D.
carbon source
D,L-Lactate (C)
-3.7
-2.6
-3.5
N.D.
N.D.
carbon source
succinate (C)
-3.8
-1.3
-4.7
N.D.
N.D.
carbon source
D-Sorbitol (C)
-3.8
-1.4
-4.5
N.D.
N.D.
carbon source
D-Glucose (C)
-3.9
-1.6
-4.0
N.D.
N.D.
carbon source
casaminos (C)
-3.7
-1.4
-4.4
N.D.
N.D.
carbon source
D-Glucose (C)
-3.9
-1.3
-4.1
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-3.7
-1.4
-4.0
N.D.
N.D.
carbon source
succinate (C)
-3.6
-1.4
-4.1
N.D.
N.D.
carbon source
Fumaric (C)
-3.3
-1.3
-4.3
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
-3.3
-1.0
-4.5
N.D.
N.D.
carbon source
Fumaric (C)
-3.7
-1.3
-3.6
N.D.
N.D.
carbon source
D,L-Lactate (C)
-3.7
-1.3
-3.5
N.D.
N.D.
carbon source
L-Rhamnose (C)
-3.0
-2.0
-3.4
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
-3.2
-1.1
-4.0
N.D.
N.D.
carbon source
L-Rhamnose (C)
-3.2
-1.2
-3.8
N.D.
N.D.
carbon source
L-Leucine (C)
-3.5
-1.2
-3.3
N.D.
N.D.
carbon source
D-Sorbitol (C)
-3.1
-0.7
-3.8
N.D.
N.D.
carbon source
L-Aspartic Acid (C)
-3.2
-1.3
-3.2
N.D.
N.D.
carbon source
L-Glutamic (C)
-2.9
-0.9
-3.8
N.D.
N.D.
carbon source
D-Fructose (C)
-3.2
-0.6
-3.4
N.D.
N.D.
carbon source
L-Leucine (C)
-2.9
-0.6
-3.6
N.D.
N.D.
carbon source
L-Glutamic (C)
-2.6
-1.0
-3.2
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-2.3
-1.2
-3.1
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-2.3
-1.0
-3.2
N.D.
N.D.
carbon source
L-Histidine (C)
-2.8
-0.5
-3.2
N.D.
N.D.
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-3.7
+1.7
-4.5
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-2.6
-1.0
-2.7
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-2.6
-1.2
-2.5
N.D.
N.D.
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