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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS17310 and QEN71_RS17315 are separated by 20 nucleotides
QEN71_RS17315 and QEN71_RS17320 are separated by 223 nucleotides
QEN71_RS17320 and QEN71_RS17325 are separated by 38 nucleotides
QEN71_RS17325 and QEN71_RS17330 are separated by 131 nucleotides
QEN71_RS17310: QEN71_RS17310 - flavin reductase family protein, at 3,841,353 to 3,841,967
_RS17310
QEN71_RS17315: QEN71_RS17315 - polyhydroxyalkanoate depolymerase, at 3,841,988 to 3,843,370
_RS17315
QEN71_RS17320: QEN71_RS17320 - glutathione S-transferase family protein, at 3,843,594 to 3,844,244
_RS17320
QEN71_RS17325: QEN71_RS17325 - methyl-accepting chemotaxis protein, at 3,844,283 to 3,846,253
_RS17325
QEN71_RS17330: QEN71_RS17330 - heavy metal translocating P-type ATPase, at 3,846,385 to 3,848,907
_RS17330
Group
Condition
QEN71
_RS17310
QEN71
_RS17315
QEN71
_RS17320
QEN71
_RS17325
QEN71
_RS17330
motility
Motility_outer_sample_with_outgrowth
-0.2
+0.1
-0.1
-1.5
+0.2
motility
Motility_outer_sample_with_outgrowth
-0.2
-0.1
-0.1
-1.5
+0.4
motility
Motility_outer_sample
+0.3
+0.1
-0.0
-1.6
+0.2
motility
Motility_outer_sample_with_outgrowth
-0.0
+0.2
-0.1
-1.5
+0.4
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.4
-0.2
-0.2
-0.2
-0.1
motility
Motility_outer_sample
+0.6
+0.0
-0.3
-1.6
+0.3
carbon source
succinate (C)
-0.9
+0.0
-0.1
+0.1
+0.0
motility
Motility_outer_sample_with_outgrowth
+0.0
+0.1
-0.1
-1.3
+0.4
carbon source
D-Sorbitol (C)
-0.7
-0.1
-0.0
+0.1
+0.1
carbon source
casaminos (C)
-0.5
-0.1
+0.0
-0.1
+0.1
stress
LB_noSalt with Chloride 200 mM
-0.5
-0.1
+0.0
-0.2
+0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.3
+0.3
+0.0
-0.1
-0.2
carbon source
D,L-Malic Acid (C)
-0.6
+0.1
+0.3
+0.0
-0.0
carbon source
casaminos (C)
-0.3
+0.2
+0.1
+0.0
-0.2
carbon source
L-Aspartic Acid (C)
-0.2
+0.1
-0.1
-0.1
+0.3
carbon source
L-Rhamnose (C)
-0.2
+0.2
-0.2
+0.2
+0.1
stress
LB_noSalt with Chloride 200 mM
-0.3
+0.1
-0.1
+0.2
+0.2
stress
LB_noSalt with Chloride 200 mM
-0.2
+0.1
+0.2
-0.1
+0.2
carbon source
D-Sorbitol (C)
-0.2
+0.2
+0.3
-0.0
-0.1
supernatant
Filtered_supernatant_MT71_in_LB
-0.4
+0.1
+0.2
+0.1
+0.1
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.1
-0.1
+0.0
+0.6
-0.2
carbon source
2-Deoxy-D-Ribose (C)
-0.4
+0.2
+0.2
+0.1
+0.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.2
+0.0
+0.1
+0.4
-0.3
carbon source
D,L-Malic Acid (C)
+0.3
+0.2
+0.1
-0.2
-0.0
carbon source
L-Leucine (C)
+0.2
+0.2
+0.1
-0.1
+0.1
carbon source
D-Xylose (C)
-0.4
+0.2
+0.3
+0.2
+0.2
motility
Motility_inner_sample_with_outgrowth
+0.2
+0.2
+0.1
+0.1
-0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.0
+0.2
+0.3
-0.1
+0.3
stress
LB_noSalt with Cobalt chloride 0.25 mM
+0.6
+0.1
+0.3
-0.1
+0.0
motility
Motility_inner_sample
+0.3
+0.3
+0.1
+0.5
+0.0
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