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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS14910 and QEN71_RS14915 are separated by 171 nucleotides
QEN71_RS14915 and QEN71_RS14920 are separated by 31 nucleotides
QEN71_RS14920 and QEN71_RS14925 overlap by 4 nucleotides
QEN71_RS14925 and QEN71_RS14930 overlap by 4 nucleotides
QEN71_RS14910: QEN71_RS14910 - hypothetical protein, at 3,325,050 to 3,325,184
_RS14910
QEN71_RS14915: QEN71_RS14915 - fatty acid desaturase, at 3,325,356 to 3,326,390
_RS14915
QEN71_RS14920: QEN71_RS14920 - non-heme iron oxygenase ferredoxin subunit, at 3,326,422 to 3,326,769
_RS14920
QEN71_RS14925: QEN71_RS14925 - FAD-dependent oxidoreductase, at 3,326,766 to 3,328,013
_RS14925
QEN71_RS14930: QEN71_RS14930 - sugar phosphate isomerase/epimerase, at 3,328,010 to 3,328,876
_RS14930
Group
Condition
QEN71
_RS14910
QEN71
_RS14915
QEN71
_RS14920
QEN71
_RS14925
QEN71
_RS14930
motility
Motility_outer_sample
-1.5
-0.1
-0.0
-0.4
-0.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-1.5
+0.0
-0.1
-0.2
+0.1
carbon source
D-Glucose (C)
-1.6
-0.1
-0.1
-0.1
+0.2
carbon source
succinate (C)
-1.4
+0.0
-0.2
-0.1
+0.3
carbon source
L-Rhamnose (C)
-1.1
-0.3
-0.1
-0.0
+0.0
motility
Motility_outer_sample_with_outgrowth
-0.8
-0.1
-0.3
-0.0
-0.0
motility
Motility_outer_sample_with_outgrowth
-1.2
-0.2
+0.2
-0.1
-0.0
motility
Motility_outer_sample
-0.9
-0.0
+0.0
-0.1
-0.1
carbon source
Fumaric (C)
-0.8
-0.1
+0.1
+0.0
-0.1
motility
Motility_outer_sample_with_outgrowth
-0.9
-0.2
+0.3
+0.1
-0.0
carbon source
L-Rhamnose (C)
-0.6
+0.0
+0.1
-0.4
+0.2
stress
LB_noSalt with Chloride 200 mM
-0.5
-0.2
-0.1
-0.1
+0.2
stress
LB_noSalt with Cobalt chloride 0.25 mM
-0.4
-0.0
+0.1
-0.3
-0.1
motility
Motility_outer_sample_with_outgrowth
-0.5
+0.1
+0.1
-0.1
-0.1
coculture
Psabiae_ML3b with MT81
-0.3
-0.1
+0.0
-0.4
+0.1
carbon source
L-Aspartic Acid (C)
-0.4
-0.1
-0.0
-0.2
+0.2
carbon source
L-Leucine (C)
-0.4
-0.2
-0.0
-0.1
+0.2
carbon source
2-Deoxy-D-Ribose (C)
-0.5
-0.1
+0.3
-0.3
+0.1
carbon source
L-Aspartic Acid (C)
-0.4
-0.2
+0.1
-0.0
+0.3
stress
LB_noSalt with Zinc 0.5 mM
+0.4
-0.0
-0.0
-0.4
-0.1
carbon source
2-Deoxy-D-Ribose (C)
+0.4
+0.1
-0.2
-0.3
-0.2
carbon source
L-Glutamic (C)
+0.3
-0.2
-0.1
-0.2
+0.1
carbon source
D-Xylose (C)
-0.4
+0.0
+0.3
-0.1
+0.1
motility
Motility_inner_sample
+0.4
-0.3
+0.1
+0.0
-0.2
supernatant
Filtered_supernatant_MT80_in_LB
-0.6
+0.0
+0.3
+0.0
+0.4
carbon source
succinate (C)
+0.3
+0.1
-0.1
-0.2
+0.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.6
-0.1
-0.3
+0.2
+0.1
motility
Motility_inner_sample
+0.5
-0.2
-0.0
+0.0
+0.2
stress
LB_noSalt with Zinc 0.5 mM
+0.8
-0.1
+0.1
-0.3
+0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.9
-0.0
+0.0
-0.1
-0.0
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