Fitness for 5 genes in Paraburkholderia sabiae LMG 24235

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500 ntQEN71_RS14050 and QEN71_RS14055 are separated by 93 nucleotidesQEN71_RS14055 and QEN71_RS14060 are separated by 164 nucleotidesQEN71_RS14060 and QEN71_RS14065 are separated by 12 nucleotidesQEN71_RS14065 and QEN71_RS14070 are separated by 47 nucleotides QEN71_RS14050: QEN71_RS14050 - AMP-binding protein, at 3,135,717 to 3,137,342 _RS14050 QEN71_RS14055: QEN71_RS14055 - SDR family NAD(P)-dependent oxidoreductase, at 3,137,436 to 3,138,146 _RS14055 QEN71_RS14060: QEN71_RS14060 - sigma-70 family RNA polymerase sigma factor, at 3,138,311 to 3,138,895 _RS14060 QEN71_RS14065: QEN71_RS14065 - hypothetical protein, at 3,138,908 to 3,139,216 _RS14065 QEN71_RS14070: QEN71_RS14070 - class I SAM-dependent methyltransferase, at 3,139,264 to 3,139,980 _RS14070
Group Condition QEN71_RS14050 QEN71_RS14055 QEN71_RS14060 QEN71_RS14065 QEN71_RS14070
motility Motility_outer_sample_with_outgrowth -0.1 +0.0 -1.0 -4.4 +0.1
motility Motility_inner_sample_with_outgrowth +0.1 +0.4 -1.2 -4.5 +0.0
motility Motility_inner_sample -0.1 +0.1 -0.4 -4.5 -0.1
carbon source 2-Deoxy-D-Ribose (C) +0.1 -0.5 -0.4 -4.4 +0.1
motility Motility_outer_sample -0.2 +0.2 -0.9 -4.3 +0.2
motility Motility_outer_sample_with_outgrowth -0.0 +1.0 -1.9 -4.2 +0.1
carbon source Fumaric (C) -0.0 -0.1 -0.5 -4.5 +0.1
carbon source D-Fructose (C) -0.2 -0.3 -0.1 -4.3 +0.1
motility Motility_inner_sample_with_outgrowth -0.1 -0.2 +0.2 -4.6 +0.0
carbon source L-Histidine (C) +0.1 +0.0 -0.1 -4.5 -0.0
carbon source succinate (C) -0.1 +0.5 -0.6 -4.4 +0.0
in planta Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.5 -0.5 -4.5 +0.1
in planta Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.2 -0.1 -4.5 +0.1
carbon source D-Xylose (C) +0.2 +0.4 -0.7 -4.3 +0.1
motility Motility_inner_sample +0.1 +0.1 +0.1 -4.4 +0.1
carbon source D-Sorbitol (C) -0.1 +0.2 +0.2 -4.3 -0.0
carbon source Fumaric (C) -0.0 +0.6 -0.1 -4.5 +0.1
stress LB_noSalt with Cobalt chloride 0.25 mM -0.1 -0.4 -0.3 -3.2 -0.0
motility Motility_outer_sample_with_outgrowth +0.1 +1.1 -1.0 -4.2 +0.2
coculture Psabiae_ML3b with MT81 -0.1 +0.5 +0.2 -4.4 -0.1
carbon source D,L-Malic Acid (C) -0.0 -0.3 +0.7 -4.2 +0.0
carbon source L-Rhamnose (C) -0.1 -0.6 -0.2 -2.8 -0.0
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.1 -0.1 -3.2 +0.1
carbon source L-Rhamnose (C) -0.1 +0.1 -0.5 -3.0 +0.2
carbon source D-Sorbitol (C) -0.1 +0.5 +0.7 -4.2 -0.1
carbon source D,L-Lactate (C) +0.1 +0.2 -1.2 -2.3 +0.0
stress LB_noSalt with Chloride 200 mM -0.1 +0.6 -0.4 -2.9 -0.0
in planta Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.7 +0.5 -3.9 -0.2
in planta Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.9 +0.4 -2.0 -0.2
carbon source D-Fructose (C) +0.0 +0.3 +0.7 -2.9 -0.0
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