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Protein
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Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS11395 and QEN71_RS11400 are separated by 43 nucleotides
QEN71_RS11400 and QEN71_RS11405 are separated by 684 nucleotides
QEN71_RS11405 and QEN71_RS11410 are separated by 273 nucleotides
QEN71_RS11410 and QEN71_RS11415 overlap by 8 nucleotides
QEN71_RS11395: QEN71_RS11395 - hypothetical protein, at 2,530,638 to 2,530,910
_RS11395
QEN71_RS11400: QEN71_RS11400 - hemagglutinin repeat-containing protein, at 2,530,954 to 2,540,877
_RS11400
QEN71_RS11405: QEN71_RS11405 - FadR/GntR family transcriptional regulator, at 2,541,562 to 2,542,263
_RS11405
QEN71_RS11410: QEN71_RS11410 - sugar ABC transporter ATP-binding protein, at 2,542,537 to 2,544,069
_RS11410
QEN71_RS11415: QEN71_RS11415 - ABC transporter permease, at 2,544,062 to 2,545,093
_RS11415
Group
Condition
QEN71
_RS11395
QEN71
_RS11400
QEN71
_RS11405
QEN71
_RS11410
QEN71
_RS11415
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-3.4
+0.1
-0.1
-0.1
+0.2
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-2.6
-0.0
-0.5
-0.1
+0.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-2.1
-0.0
-0.1
+0.1
-0.2
carbon source
D-Sorbitol (C)
-0.6
+0.0
-1.1
+0.1
+0.0
carbon source
D-Sorbitol (C)
-0.9
+0.0
-0.8
+0.4
+0.1
carbon source
succinate (C)
-0.5
-0.0
+0.2
-0.3
-0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-1.1
+0.0
-0.1
+0.2
+0.1
carbon source
L-Aspartic Acid (C)
-0.5
+0.0
+0.2
-0.0
-0.3
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-0.0
+0.1
-0.2
-0.3
carbon source
D,L-Lactate (C)
-0.2
+0.0
+0.2
-0.0
-0.3
carbon source
D-Fructose (C)
-0.3
+0.0
+0.2
+0.1
-0.2
carbon source
Fumaric (C)
+0.3
+0.0
+0.1
-0.1
-0.5
stress
LB_noSalt with Cobalt chloride 0.25 mM
-0.2
+0.0
-0.2
+0.1
+0.2
carbon source
D-Glucose (C)
-0.3
-0.0
+0.3
+0.1
-0.2
motility
Motility_outer_sample_with_outgrowth
-0.1
+0.4
+0.1
-0.3
-0.2
carbon source
D,L-Lactate (C)
+0.2
+0.0
+0.0
+0.1
-0.4
carbon source
L-Glutamic (C)
-0.2
-0.0
-0.1
-0.0
+0.3
carbon source
D,L-Malic Acid (C)
-0.4
+0.1
+0.1
+0.1
+0.1
carbon source
Fumaric (C)
-0.3
-0.0
+0.2
+0.2
-0.2
motility
Motility_outer_sample_with_outgrowth
+0.1
+0.4
-0.3
-0.2
+0.1
carbon source
L-Leucine (C)
+0.2
+0.0
+0.2
+0.1
-0.3
motility
Motility_inner_sample
-0.3
+0.0
+0.3
+0.3
-0.1
carbon source
succinate (C)
-0.2
+0.0
+0.2
-0.0
+0.2
carbon source
D-Fructose (C)
-0.2
-0.0
+0.3
+0.2
+0.2
stress
LB_noSalt with Chloride 200 mM
+0.2
+0.0
-0.1
+0.1
+0.2
motility
Motility_outer_sample
-0.2
+0.2
-0.1
+0.0
+0.4
motility
Motility_outer_sample_with_outgrowth
+0.1
+0.4
-0.2
-0.0
+0.4
motility
Motility_inner_sample
+0.2
+0.0
+0.1
-0.1
+0.4
supernatant
Filtered_supernatant_MT81_in_LB
+0.2
+0.0
+0.3
+0.2
+0.1
carbon source
D-Xylose (C)
-0.3
+0.0
+1.5
+0.3
+0.1
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