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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS06405 and QEN71_RS06410 are separated by 6 nucleotides
QEN71_RS06410 and QEN71_RS06415 are separated by 25 nucleotides
QEN71_RS06415 and QEN71_RS06420 are separated by 398 nucleotides
QEN71_RS06420 and QEN71_RS06425 are separated by 189 nucleotides
QEN71_RS06405: QEN71_RS06405 - pseudouridine synthase, at 1,421,251 to 1,423,449
_RS06405
QEN71_RS06410: QEN71_RS06410 - [protein-PII] uridylyltransferase, at 1,423,456 to 1,426,035
_RS06410
QEN71_RS06415: QEN71_RS06415 - type I methionyl aminopeptidase, at 1,426,061 to 1,426,873
_RS06415
QEN71_RS06420: QEN71_RS06420 - 30S ribosomal protein S2, at 1,427,272 to 1,428,024
_RS06420
QEN71_RS06425: QEN71_RS06425 - translation elongation factor Ts, at 1,428,214 to 1,429,095
_RS06425
Group
Condition
QEN71
_RS06405
QEN71
_RS06410
QEN71
_RS06415
QEN71
_RS06420
QEN71
_RS06425
motility
Motility_outer_sample_with_outgrowth
+0.2
-0.7
-2.6
N.D.
N.D.
motility
Motility_outer_sample_with_outgrowth
+0.4
-0.8
-2.6
N.D.
N.D.
motility
Motility_outer_sample_with_outgrowth
+0.4
-0.9
-2.1
N.D.
N.D.
motility
Motility_outer_sample_with_outgrowth
+0.4
-0.8
-2.1
N.D.
N.D.
motility
Motility_outer_sample
+0.3
-0.5
-2.1
N.D.
N.D.
motility
Motility_outer_sample
+0.4
-0.7
-1.9
N.D.
N.D.
motility
Motility_inner_sample_with_outgrowth
+0.1
-0.7
-1.4
N.D.
N.D.
motility
Motility_inner_sample
+0.1
-0.8
-1.2
N.D.
N.D.
motility
Motility_inner_sample
+0.1
-0.8
-1.1
N.D.
N.D.
motility
Motility_inner_sample
+0.1
-0.7
-1.1
N.D.
N.D.
motility
Motility_inner_sample
+0.1
-0.7
-1.1
N.D.
N.D.
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-1.6
-0.2
N.D.
N.D.
motility
Motility_inner_sample_with_outgrowth
+0.2
-0.8
-1.0
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.0
-1.1
-0.4
N.D.
N.D.
stress
LB_noSalt with Zinc 0.5 mM
-0.3
+0.1
-1.2
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-1.1
-0.4
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.0
-0.7
-0.6
N.D.
N.D.
carbon source
L-Leucine (C)
-0.1
+1.0
+0.5
N.D.
N.D.
carbon source
L-Leucine (C)
+0.1
+1.0
+0.5
N.D.
N.D.
carbon source
D-Fructose (C)
-0.1
+1.4
+0.4
N.D.
N.D.
carbon source
D-Glucose (C)
+0.0
+1.4
+0.4
N.D.
N.D.
carbon source
D-Glucose (C)
-0.0
+1.4
+0.4
N.D.
N.D.
carbon source
D-Fructose (C)
-0.1
+1.6
+0.4
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.1
+1.6
+0.7
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.0
+1.6
+0.6
N.D.
N.D.
carbon source
L-Histidine (C)
-0.1
+1.4
+0.9
N.D.
N.D.
carbon source
L-Histidine (C)
-0.1
+1.4
+1.0
N.D.
N.D.
carbon source
L-Rhamnose (C)
-0.1
+2.0
+0.6
N.D.
N.D.
carbon source
L-Rhamnose (C)
-0.0
+1.9
+0.7
N.D.
N.D.
carbon source
D-Xylose (C)
+0.2
+2.1
+0.9
N.D.
N.D.
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