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Cofit
Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS05460 and QEN71_RS05465 are separated by 200 nucleotides
QEN71_RS05465 and QEN71_RS05470 are separated by 295 nucleotides
QEN71_RS05470 and QEN71_RS05475 are separated by 355 nucleotides
QEN71_RS05475 and QEN71_RS05480 are separated by 285 nucleotides
QEN71_RS05460: QEN71_RS05460 - DMT family transporter, at 1,206,835 to 1,207,767
_RS05460
QEN71_RS05465: QEN71_RS05465 - L-lactate permease, at 1,207,968 to 1,209,566
_RS05465
QEN71_RS05470: QEN71_RS05470 - hypothetical protein, at 1,209,862 to 1,210,449
_RS05470
QEN71_RS05475: QEN71_RS05475 - glycine zipper 2TM domain-containing protein, at 1,210,805 to 1,211,017
_RS05475
QEN71_RS05480: QEN71_RS05480 - phosphomethylpyrimidine synthase ThiC, at 1,211,303 to 1,213,234
_RS05480
Group
Condition
QEN71
_RS05460
QEN71
_RS05465
QEN71
_RS05470
QEN71
_RS05475
QEN71
_RS05480
carbon source
D-Xylose (C)
-0.2
+0.1
+0.0
N.D.
-4.5
carbon source
D-Sorbitol (C)
+0.2
-0.0
+0.0
N.D.
-4.0
carbon source
D-Glucose (C)
-0.2
-0.0
+0.1
N.D.
-2.8
carbon source
L-Leucine (C)
-0.4
-0.0
+0.1
N.D.
-2.6
carbon source
L-Rhamnose (C)
-0.1
+0.0
-0.0
N.D.
-2.8
carbon source
D-Glucose (C)
-0.0
-0.0
+0.1
N.D.
-2.8
carbon source
D-Sorbitol (C)
+0.4
+0.2
+0.1
N.D.
-3.4
carbon source
Fumaric (C)
+0.1
+0.1
-0.1
N.D.
-2.5
carbon source
L-Leucine (C)
+0.1
+0.0
+0.1
N.D.
-2.6
carbon source
L-Rhamnose (C)
+0.2
+0.0
+0.2
N.D.
-2.8
carbon source
Fumaric (C)
+0.1
+0.1
+0.1
N.D.
-2.4
carbon source
D,L-Malic Acid (C)
+0.1
+0.0
+0.2
N.D.
-2.3
carbon source
D-Fructose (C)
+0.0
+0.1
+0.2
N.D.
-2.2
carbon source
D-Fructose (C)
+0.1
-0.1
+0.1
N.D.
-2.0
carbon source
D,L-Lactate (C)
-0.2
+0.1
+0.1
N.D.
-1.8
carbon source
D,L-Malic Acid (C)
+0.2
-0.0
+0.1
N.D.
-2.0
carbon source
L-Histidine (C)
-0.1
+0.1
-0.0
N.D.
-1.7
carbon source
D,L-Lactate (C)
-0.0
+0.1
+0.1
N.D.
-1.8
carbon source
succinate (C)
+0.1
+0.2
+0.1
N.D.
-2.0
carbon source
succinate (C)
+0.3
+0.1
+0.1
N.D.
-1.9
carbon source
casaminos (C)
+0.1
+0.1
+0.0
N.D.
-1.6
carbon source
casaminos (C)
+0.2
+0.1
+0.0
N.D.
-1.7
carbon source
L-Histidine (C)
+0.1
+0.2
+0.2
N.D.
-1.7
carbon source
L-Glutamic (C)
-0.1
+0.0
+0.0
N.D.
-1.1
carbon source
2-Deoxy-D-Ribose (C)
+0.2
-0.0
+0.0
N.D.
-1.3
carbon source
2-Deoxy-D-Ribose (C)
+0.1
+0.1
+0.1
N.D.
-1.4
carbon source
L-Glutamic (C)
-0.0
+0.2
+0.0
N.D.
-1.2
carbon source
L-Aspartic Acid (C)
+0.2
-0.0
+0.0
N.D.
-0.7
carbon source
L-Aspartic Acid (C)
+0.3
+0.1
+0.1
N.D.
-0.9
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.4
+0.1
+0.2
N.D.
+0.1
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