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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS02130 and QEN71_RS02135 are separated by 218 nucleotides
QEN71_RS02135 and QEN71_RS02140 are separated by 77 nucleotides
QEN71_RS02140 and QEN71_RS02145 are separated by 608 nucleotides
QEN71_RS02145 and QEN71_RS02150 are separated by 60 nucleotides
QEN71_RS02130: QEN71_RS02130 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 478,225 to 479,055
_RS02130
QEN71_RS02135: QEN71_RS02135 - porin, at 479,274 to 480,401
_RS02135
QEN71_RS02140: QEN71_RS02140 - lactoylglutathione lyase, at 480,479 to 480,865
_RS02140
QEN71_RS02145: QEN71_RS02145 - SprT family zinc-dependent metalloprotease, at 481,474 to 482,331
_RS02145
QEN71_RS02150: QEN71_RS02150 - lysophospholipid acyltransferase family protein, at 482,392 to 483,150
_RS02150
Group
Condition
QEN71
_RS02130
QEN71
_RS02135
QEN71
_RS02140
QEN71
_RS02145
QEN71
_RS02150
motility
Motility_outer_sample
-0.5
+0.2
-0.2
-0.2
-3.3
motility
Motility_outer_sample
-0.4
+0.1
+0.1
-0.1
-3.3
motility
Motility_outer_sample_with_outgrowth
-0.0
+0.0
-0.2
+0.1
-3.3
motility
Motility_outer_sample_with_outgrowth
-0.2
+0.0
-0.0
-0.1
-3.1
motility
Motility_outer_sample_with_outgrowth
-0.1
+0.0
-0.0
-0.1
-3.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.8
+0.1
+0.0
+0.1
-2.7
motility
Motility_outer_sample_with_outgrowth
-0.1
+0.1
-0.1
-0.0
-3.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-2.0
+0.2
+0.2
+0.3
-2.0
carbon source
D-Glucose (C)
-1.1
+0.1
+0.1
-0.1
-2.2
motility
Motility_inner_sample_with_outgrowth
+0.3
+0.0
-0.1
-0.0
-3.4
motility
Motility_inner_sample
+0.1
-0.1
-0.3
-0.0
-2.8
supernatant
Filtered_supernatant_MT80_in_LB
-0.6
+0.0
-0.1
+0.1
-2.4
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-1.0
+0.1
+0.1
+0.3
-2.3
motility
Motility_inner_sample
+0.3
-0.0
+0.1
+0.0
-3.0
motility
Motility_inner_sample
+0.1
-0.0
-0.1
-0.0
-2.5
stress
LB_noSalt with Cobalt chloride 0.25 mM
-0.1
+0.1
-0.1
-0.0
-2.3
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.8
+0.2
-0.0
+0.2
-1.7
motility
Motility_inner_sample_with_outgrowth
-0.5
+0.1
+0.0
+0.1
-1.9
carbon source
succinate (C)
-1.0
+0.2
-0.1
-0.0
-1.2
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-1.4
+0.2
+0.0
+0.4
-1.3
stress
LB_noSalt with Chloride 200 mM
-0.2
+0.0
+0.0
+0.0
-1.8
carbon source
D-Fructose (C)
-0.6
+0.0
+0.1
-0.0
-1.3
supernatant
Filtered_supernatant_MT81_in_LB
-0.5
+0.1
-0.0
+0.2
-1.5
stress
LB_noSalt with Chloride 200 mM
+0.0
+0.0
-0.2
+0.2
-1.7
carbon source
casaminos (C)
-0.4
-0.0
+0.1
+0.1
-1.5
carbon source
D-Xylose (C)
+0.0
+0.1
+0.1
+0.3
-2.0
carbon source
L-Glutamic (C)
+0.4
-0.0
-0.1
-0.1
-1.5
motility
Motility_inner_sample
+0.4
-0.1
-0.1
-0.1
-1.5
stress
LB_noSalt with Zinc 0.5 mM
+0.3
+0.1
+0.1
+0.2
-1.9
supernatant
Filtered_supernatant_MT183_in_LB
+0.6
-0.1
+0.1
-0.1
-1.2
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