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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS01720 and QEN71_RS01725 are separated by 7 nucleotides
QEN71_RS01725 and QEN71_RS01730 are separated by 9 nucleotides
QEN71_RS01730 and QEN71_RS01735 are separated by 58 nucleotides
QEN71_RS01735 and QEN71_RS01740 are separated by 77 nucleotides
QEN71_RS01720: QEN71_RS01720 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 377,215 to 378,045
_RS01720
QEN71_RS01725: QEN71_RS01725 - A/G-specific adenine glycosylase, at 378,053 to 379,150
_RS01725
QEN71_RS01730: QEN71_RS01730 - LON peptidase substrate-binding domain-containing protein, at 379,160 to 379,795
_RS01730
QEN71_RS01735: QEN71_RS01735 - RNase adapter RapZ, at 379,854 to 380,747
_RS01735
QEN71_RS01740: QEN71_RS01740 - HPr(Ser) kinase/phosphatase, at 380,825 to 381,793
_RS01740
Group
Condition
QEN71
_RS01720
QEN71
_RS01725
QEN71
_RS01730
QEN71
_RS01735
QEN71
_RS01740
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-0.0
-0.1
-1.0
N.D.
stress
LB_noSalt with Zinc 0.5 mM
+0.1
+0.1
-0.1
-1.0
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.0
+0.1
+0.2
-1.2
N.D.
stress
LB_noSalt with Zinc 0.5 mM
+0.0
+0.0
+0.2
-1.0
N.D.
supernatant
Filtered_supernatant_MT71_in_LB
-0.1
-0.1
+0.1
-0.3
N.D.
supernatant
Filtered_supernatant_MT80_in_LB
-0.1
-0.1
+0.1
-0.3
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
+0.0
+0.3
-0.6
N.D.
motility
Motility_outer_sample_with_outgrowth
+0.1
-0.0
+0.2
-0.3
N.D.
motility
Motility_outer_sample_with_outgrowth
+0.2
+0.0
-0.1
-0.3
N.D.
carbon source
Fumaric (C)
+0.1
+0.2
+0.2
-0.3
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.2
-0.1
+0.5
-0.0
N.D.
motility
Motility_inner_sample
+0.0
-0.1
+0.4
+0.1
N.D.
carbon source
casaminos (C)
-0.1
+0.0
+0.2
+0.2
N.D.
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
+0.2
+0.9
-0.6
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+0.1
-0.0
+0.4
+0.2
N.D.
carbon source
succinate (C)
-0.0
+0.0
+0.1
+0.6
N.D.
carbon source
D-Glucose (C)
+0.2
+0.1
+0.0
+0.5
N.D.
carbon source
D,L-Malic Acid (C)
+0.1
+0.2
+0.1
+0.5
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+0.2
+0.2
+0.4
+0.2
N.D.
carbon source
L-Leucine (C)
-0.0
+0.0
+0.3
+0.7
N.D.
carbon source
L-Leucine (C)
+0.2
-0.0
+0.1
+0.6
N.D.
carbon source
D-Glucose (C)
+0.2
+0.2
+0.1
+0.5
N.D.
carbon source
D,L-Malic Acid (C)
+0.2
-0.0
+0.4
+0.5
N.D.
carbon source
D-Xylose (C)
+0.3
+0.1
+0.8
+0.0
N.D.
carbon source
L-Rhamnose (C)
+0.2
-0.0
+0.3
+0.9
N.D.
carbon source
D-Sorbitol (C)
+0.2
+0.2
+0.3
+0.6
N.D.
carbon source
D-Fructose (C)
+0.1
+0.2
+0.3
+0.8
N.D.
carbon source
D-Sorbitol (C)
+0.1
+0.3
+0.5
+0.6
N.D.
carbon source
D-Fructose (C)
+0.2
+0.2
+0.3
+0.7
N.D.
carbon source
L-Rhamnose (C)
+0.3
+0.1
+0.3
+0.8
N.D.
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QEN71_RS01730
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