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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS00570 and QEN71_RS00575 are separated by 292 nucleotides
QEN71_RS00575 and QEN71_RS00580 are separated by 171 nucleotides
QEN71_RS00580 and QEN71_RS00585 are separated by 258 nucleotides
QEN71_RS00585 and QEN71_RS00590 are separated by 3 nucleotides
QEN71_RS00570: QEN71_RS00570 - DUF4148 domain-containing protein, at 123,240 to 123,527
_RS00570
QEN71_RS00575: QEN71_RS00575 - NAD(P)/FAD-dependent oxidoreductase, at 123,820 to 124,926
_RS00575
QEN71_RS00580: QEN71_RS00580 - high-potential iron-sulfur protein, at 125,098 to 125,412
_RS00580
QEN71_RS00585: QEN71_RS00585 - MFS transporter, at 125,671 to 126,981
_RS00585
QEN71_RS00590: QEN71_RS00590 - amidase, at 126,985 to 128,481
_RS00590
Group
Condition
QEN71
_RS00570
QEN71
_RS00575
QEN71
_RS00580
QEN71
_RS00585
QEN71
_RS00590
carbon source
D-Xylose (C)
+0.0
-0.9
-0.1
+0.2
-0.1
carbon source
2-Deoxy-D-Ribose (C)
-0.2
-0.5
+0.0
-0.1
+0.0
carbon source
2-Deoxy-D-Ribose (C)
-0.2
-0.6
+0.0
+0.1
+0.1
carbon source
D-Sorbitol (C)
-0.0
-0.7
-0.5
+0.5
+0.1
carbon source
L-Rhamnose (C)
-0.4
-0.3
+0.0
+0.2
+0.1
carbon source
D-Glucose (C)
-0.1
-0.3
-0.1
+0.1
+0.0
carbon source
L-Leucine (C)
-0.1
-0.6
+0.0
+0.1
+0.1
carbon source
succinate (C)
-0.3
-0.2
+0.2
+0.0
-0.1
carbon source
L-Leucine (C)
+0.1
-0.4
-0.1
+0.3
-0.1
stress
LB_noSalt with Chloride 200 mM
-0.3
-0.0
-0.2
-0.0
+0.2
carbon source
L-Histidine (C)
-0.2
-0.4
+0.1
+0.3
+0.0
carbon source
D-Fructose (C)
-0.1
-0.3
+0.1
+0.2
-0.1
carbon source
Fumaric (C)
-0.2
-0.2
+0.2
+0.0
+0.1
carbon source
D-Sorbitol (C)
+0.2
-0.5
-0.2
+0.4
+0.0
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.1
-0.1
-0.1
+0.2
+0.2
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.6
-0.4
+0.3
-0.7
+0.3
carbon source
D,L-Lactate (C)
+0.0
-0.3
-0.0
+0.1
+0.2
carbon source
L-Aspartic Acid (C)
+0.2
-0.2
+0.0
-0.1
+0.2
stress
LB_noSalt with Zinc 0.5 mM
-0.1
+0.1
+0.3
-0.1
-0.1
carbon source
L-Glutamic (C)
+0.1
-0.2
+0.2
-0.0
+0.1
carbon source
D-Glucose (C)
+0.1
-0.3
+0.2
+0.2
+0.0
motility
Motility_outer_sample_with_outgrowth
+0.2
-0.2
-0.2
+0.1
+0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.2
-0.2
-0.1
+0.1
+0.1
motility
Motility_outer_sample
+0.3
-0.1
-0.2
+0.2
+0.0
motility
Motility_inner_sample
-0.0
-0.2
+0.1
+0.2
+0.2
motility
Motility_inner_sample
+0.3
-0.2
-0.0
+0.0
+0.1
supernatant
Filtered_supernatant_MT183_in_LB
+0.1
-0.0
+0.2
+0.2
+0.2
motility
Motility_outer_sample
+0.2
-0.0
+0.1
+0.2
+0.1
motility
Motility_outer_sample_with_outgrowth
+0.7
-0.2
-0.1
+0.1
+0.2
motility
Motility_outer_sample_with_outgrowth
+0.6
-0.1
-0.0
+0.3
+0.1
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QEN71_RS00580
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