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Cofit
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_RNA41 and Psyr_2428 are separated by 658 nucleotides
Psyr_2428 and Psyr_RNA42 are separated by 578 nucleotides
Psyr_RNA42 and Psyr_2429 are separated by 134 nucleotides
Psyr_2429 and Psyr_2430 are separated by 89 nucleotides
Psyr_RNA41: Psyr_RNA41 - tRNA-Val, at 2,809,115 to 2,809,191
_RNA41
Psyr_2428: Psyr_2428 - GCN5-related N-acetyltransferase, at 2,809,850 to 2,810,326
_2428
Psyr_RNA42: Psyr_RNA42 - tRNA-Val, at 2,810,905 to 2,810,981
_RNA42
Psyr_2429: Psyr_2429 - conserved hypothetical protein, at 2,811,116 to 2,812,177
_2429
Psyr_2430: Psyr_2430 - NUDIX hydrolase, at 2,812,267 to 2,812,665
_2430
Group
Condition
Psyr
_RNA41
Psyr
_2428
Psyr
_RNA42
Psyr
_2429
Psyr
_2430
in planta
apoplastic, chopping recovery; Green bean
N.D.
-0.3
N.D.
-1.8
-0.2
stress
KB with Sclareolide 10 mM
N.D.
-0.5
N.D.
-0.8
-0.3
stress
KB with Paclitaxel 10 mM
N.D.
-0.2
N.D.
-0.7
-0.3
stress
KB with Dimethyl Sulfoxide 1.25 vol%
N.D.
-0.3
N.D.
-0.5
-0.4
stress
KB with Piperine 10 mM
N.D.
-0.2
N.D.
-0.5
-0.4
kb
KB
N.D.
-0.1
N.D.
-0.8
-0.2
stress
KB with Curcumin 10 mM
N.D.
-0.2
N.D.
-0.2
-0.6
stress
KB with Diallyl sulfide 10 mM
N.D.
-0.4
N.D.
-0.4
-0.3
in planta
apoplastic, chopping recovery; Green bean
N.D.
-0.3
N.D.
-0.7
-0.1
stress
KB with Avocatin A 10 mM
N.D.
-0.3
N.D.
-0.4
-0.3
stress
KB with 4-hydroxychalcone 10 mM
N.D.
-0.2
N.D.
-0.7
-0.1
stress
KB with Veratrine 10 mM
N.D.
-0.3
N.D.
-0.5
-0.2
stress
KB with Emodin 10 mM
N.D.
-0.5
N.D.
-0.3
-0.1
stress
KB with d-limonene 10 mM
N.D.
-0.5
N.D.
-0.6
+0.2
stress
KB with Totarol 10 mM
N.D.
-0.3
N.D.
-0.3
-0.3
stress
KB with Auraptene 10 mM
N.D.
-0.3
N.D.
-0.6
+0.0
stress
KB with Avocadyne 10 mM
N.D.
-0.8
N.D.
-0.0
+0.1
stress
KB with Gossypol-Acetic Acid Complex 10 mM
N.D.
-0.9
N.D.
+0.5
-0.2
stress
KB with Sinomenine 10 mM
N.D.
-0.6
N.D.
+0.4
-0.1
stress
KB with Acridine orange 3.125 ug/ml
N.D.
-0.8
N.D.
-0.2
+0.8
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
N.D.
-0.6
N.D.
+0.4
+0.1
stress
KB with Dimethyl Sulfoxide 0.42 vol%
N.D.
-0.1
N.D.
+0.7
-0.5
stress
KB with Anabasine Hydrochloride 10 mM
N.D.
-0.6
N.D.
+0.3
+0.3
stress
KB with Erythromycin 6.25 ug/ml
N.D.
-0.1
N.D.
+0.6
-0.4
stress
KB with Oxonitine 10 mM
N.D.
-0.4
N.D.
+0.3
+0.2
stress
KB with Nitrofurantoin 31.25 ug/ml
N.D.
+0.2
N.D.
+0.4
-0.5
stress
KB with Trimethoprim 15.6 ug/ml
N.D.
+0.1
N.D.
+0.6
-0.4
stress
KB with Oxedrine 10 mM
N.D.
-0.3
N.D.
+0.2
+0.4
stress
KB with Mitomycin C 0.05 ug/ml
N.D.
-1.0
N.D.
+0.4
+0.9
stress
KB with Carbenicillin 3.1 ug/ml
N.D.
-0.2
N.D.
+1.2
-0.1
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