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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4760 and Psyr_4761 are separated by 97 nucleotides
Psyr_4761 and Psyr_4762 are separated by 45 nucleotides
Psyr_4762 and Psyr_4763 are separated by 184 nucleotides
Psyr_4763 and Psyr_4764 are separated by 85 nucleotides
Psyr_4760: Psyr_4760 - conserved hypothetical protein, at 5,635,726 to 5,636,064
_4760
Psyr_4761: Psyr_4761 - DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase, at 5,636,162 to 5,636,974
_4761
Psyr_4762: Psyr_4762 - conserved hypothetical protein, at 5,637,020 to 5,637,886
_4762
Psyr_4763: Psyr_4763 - Peptidase C56, PfpI, at 5,638,071 to 5,638,610
_4763
Psyr_4764: Psyr_4764 - SAM-dependent methyltransferase, at 5,638,696 to 5,639,892
_4764
Group
Condition
Psyr
_4760
Psyr
_4761
Psyr
_4762
Psyr
_4763
Psyr
_4764
stress
KB with Flavone 0.125 mg/ml
-0.7
-0.0
-0.0
-0.6
-0.1
stress
KB with Harmol 10 mM
-1.5
+0.3
-0.1
-0.0
+0.0
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-1.0
+0.2
-0.1
-0.2
+0.1
stress
KB with Nalidixic 0.775 ug/ml
-1.2
-0.0
-0.1
+0.3
-0.1
stress
KB with Sclareolide 10 mM
-0.7
+0.1
-0.1
-0.4
+0.1
stress
KB with D-Salicin 240 ug/ml
-0.6
+0.0
+0.1
-0.5
+0.1
stress
KB with Strychnine Sulfate 10 mM
-0.8
-0.2
+0.0
+0.1
+0.2
stress
KB with Biochanin a diacetate 10 mM
+0.2
+0.2
-0.2
-0.9
+0.0
stress
KB with Cantharidin 10 mM
-0.7
+0.1
+0.0
+0.3
-0.2
stress
KB with Piperine 10 mM
+0.4
-0.2
-0.1
-0.7
+0.0
in planta
apoplastic, chopping recovery; Green bean
+0.7
-0.1
+0.0
-1.0
+0.0
stress
KB with Nitrofurantoin 31.25 ug/ml
-0.9
+0.2
+0.1
+0.4
+0.1
in planta
apoplastic, chopping recovery; Green bean
+0.7
-0.3
+0.1
-0.8
+0.2
in planta
apoplastic, chopping recovery; Green bean
+0.5
-0.0
+0.2
-0.7
+0.0
in planta
apoplastic, chopping recovery; Green bean
+0.8
-0.2
+0.2
-0.5
-0.1
stress
KB with Oxedrine 10 mM
+0.6
-0.0
+0.1
-0.6
+0.0
stress
KB with Conessine 10 mM
+0.5
+0.2
-0.1
-0.7
+0.2
stress
KB with Paclitaxel 10 mM
+0.5
+0.1
-0.0
-0.4
+0.1
in planta
apoplastic; Green bean; 6 days
+0.7
-0.1
+0.1
-0.4
+0.1
stress
KB with 4-acetoxyphenol 10 mM
+0.7
-0.0
+0.0
-0.3
+0.1
stress
KB with Palmatine 10 mM
+0.5
-0.0
-0.1
-0.2
+0.4
stress
KB with Avocadyne 10 mM
+0.4
-0.2
-0.1
+0.3
+0.3
stress
KB with Novobiocin 7.75 ug/ml
+0.8
+0.2
+0.0
-0.2
-0.0
stress
KB with Quercetin 360 ug/ml
+0.9
+0.1
+0.0
-0.3
-0.1
in planta
apoplastic; Green bean; 6 days
+0.9
-0.2
+0.2
-0.1
-0.1
in planta
epiphytic; Lima bean
+0.1
-0.1
+0.3
+0.5
+0.1
stress
KB with Diallyl sulfide 10 mM
+0.8
+0.2
-0.0
-0.1
+0.2
in planta
epiphytic; Lima bean
+0.7
-0.1
+0.3
+0.3
+0.0
stress
KB with Solanesol 10 mM
+1.0
+0.1
+0.0
-0.1
+0.1
stress
KB with Harmine 10 mM
+1.2
-0.0
+0.1
-0.0
-0.0
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