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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4331 and Psyr_4332 are separated by 274 nucleotides
Psyr_4332 and Psyr_4333 are separated by 25 nucleotides
Psyr_4333 and Psyr_4334 are separated by 6 nucleotides
Psyr_4334 and Psyr_4335 are separated by 381 nucleotides
Psyr_4331: Psyr_4331 - galactose 1-dehydrogenase, at 5,182,992 to 5,183,918
_4331
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Psyr_4334: Psyr_4334 - conserved hypothetical protein, at 5,185,538 to 5,186,704
_4334
Psyr_4335: Psyr_4335 - transcriptional regulator, AsnC family, at 5,187,086 to 5,187,577
_4335
Group
Condition
Psyr
_4331
Psyr
_4332
Psyr
_4333
Psyr
_4334
Psyr
_4335
in planta
apoplastic, chopping recovery; Green bean
-2.2
+0.0
-0.0
+0.1
-0.3
stress
KB with Chloramphenicol 1.55 ug/ml
-1.8
-0.2
+0.2
-0.0
+0.1
in planta
apoplastic, chopping recovery; Green bean
-1.7
+0.1
+0.0
-0.1
-0.0
stress
KB with Acridine orange 3.125 ug/ml
-1.5
-0.1
+0.3
+0.1
-0.5
stress
KB with Totarol 10 mM
-1.3
-0.0
-0.0
+0.1
-0.2
stress
KB with Dimethyl Sulfoxide 0.42 vol%
-0.4
+0.1
+0.1
+0.1
-1.2
in planta
Green bean; epiphytic
-1.6
-0.1
+0.0
+0.1
+0.3
stress
KB with Phloretin 125 ug/ml
-0.8
-0.2
+0.2
+0.0
-0.7
stress
KB with Oxonitine 10 mM
-0.7
+0.1
+0.0
+0.0
-0.6
stress
KB with Berberine 15.6 ug/ml
-0.4
+0.1
+0.3
+0.0
-0.7
stress
KB with Tetracycline 0.0015 ug/ml
-1.2
-0.0
+0.3
+0.0
+0.2
stress
KB with Harmine 10 mM
-0.8
-0.1
+0.5
+0.2
-0.3
stress
KB with Conessine 10 mM
-0.4
+0.2
+0.4
+0.0
-0.7
stress
KB with Paclitaxel 10 mM
-0.5
+0.2
+0.2
+0.1
-0.4
stress
KB with Veratrine 10 mM
+0.3
+0.1
+0.1
+0.1
-1.0
in planta
epiphytic; Lima bean
+1.1
-0.1
-0.1
+0.3
-1.3
stress
KB with 4-hydroxychalcone 10 mM
+0.2
+0.3
+0.1
+0.1
-0.8
stress
KB with Prenyletin 10 mM
-0.9
+0.3
+0.0
+0.2
+0.5
stress
KB with Palmatine 10 mM
-0.7
+0.1
+0.2
-0.0
+0.5
stress
KB with Physcion 10 mM
+0.4
+0.1
+0.2
+0.1
-0.5
stress
KB with Sinomenine 10 mM
+0.8
+0.1
+0.1
+0.1
-0.7
in planta
epiphytic; Lima bean
+1.4
-0.1
+0.1
-0.1
-0.5
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.9
+0.3
+0.1
+0.0
-0.1
stress
KB with Levodopa 10 mM
+0.6
+0.2
-0.1
+0.1
+0.5
stress
KB with Biochanin a diacetate 10 mM
+0.2
+0.3
+0.3
+0.1
+0.5
stress
KB with Escin 10 mM
+0.6
+0.3
+0.2
+0.1
+0.3
stress
KB with Piperine 10 mM
+0.6
+0.3
+0.1
+0.2
+0.4
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.5
+0.1
+0.3
+0.2
+0.4
stress
KB with Avocatin A 10 mM
+0.7
+0.3
+0.2
+0.2
+0.3
stress
KB with Curcumin 10 mM
+0.6
+0.1
+0.4
+0.2
+0.5
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