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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4302 and Psyr_4303 are separated by 197 nucleotides
Psyr_4303 and Psyr_4304 are separated by 33 nucleotides
Psyr_4304 and Psyr_4305 are separated by 184 nucleotides
Psyr_4305 and Psyr_4306 are separated by 104 nucleotides
Psyr_4302: Psyr_4302 - conserved hypothetical protein, at 5,128,171 to 5,128,875
_4302
Psyr_4303: Psyr_4303 - Protein of unknown function UPF0259, at 5,129,073 to 5,129,735
_4303
Psyr_4304: Psyr_4304 - Endonuclease/exonuclease/phosphatase, at 5,129,769 to 5,130,911
_4304
Psyr_4305: Psyr_4305 - conserved hypothetical protein, at 5,131,096 to 5,131,344
_4305
Psyr_4306: Psyr_4306 - conserved hypothetical protein, at 5,131,449 to 5,131,646
_4306
Group
Condition
Psyr
_4302
Psyr
_4303
Psyr
_4304
Psyr
_4305
Psyr
_4306
stress
KB with Piperine 10 mM
+0.1
-0.3
-0.2
-0.7
-1.2
stress
KB with Acridine orange 3.125 ug/ml
+0.0
-0.1
-0.1
-0.8
-1.1
stress
KB with Nitrofurantoin 0.0625 mg/ml
-0.2
-0.1
+0.2
-1.1
-0.7
stress
KB with Carbenicillin 3.1 ug/ml
-0.2
+0.2
-0.1
-0.5
-1.2
stress
KB with Benzalkonium chloride 1.55 ug/ml
+0.1
-0.3
-0.2
-0.5
-0.9
stress
KB with Mitomycin C 0.05 ug/ml
-0.0
-0.3
-0.1
-0.8
-0.6
kb
KB
-0.2
-0.1
-0.1
-0.3
-0.9
stress
KB with Isosafrole 10 mM
-0.1
+0.1
-0.2
-0.2
-1.1
stress
KB with Sinomenine 10 mM
-0.3
+0.0
-0.0
-0.6
-0.7
stress
KB with capsaicin 0.25 mg/ml
+0.1
-0.1
-0.1
-0.6
-0.7
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.2
-0.3
-0.2
-0.6
-0.2
stress
KB with Lupeol 10 mM
-0.1
-0.1
+0.2
-1.4
-0.2
stress
KB with Tetracycline 0.0015 ug/ml
-0.0
+0.3
+0.3
-1.6
-0.4
stress
KB with Totarol 10 mM
+0.0
+0.1
-0.2
-1.2
-0.2
stress
KB with Avocadene 10 mM
-0.2
+0.1
-0.1
-0.2
-1.0
stress
KB with Trimethoprim 15.6 ug/ml
-0.3
+0.1
-0.2
-0.5
-0.4
stress
KB with Novobiocin 7.75 ug/ml
+0.0
-0.3
-0.1
-0.4
-0.7
in planta
epiphytic; Lima bean
+0.2
+0.1
+0.2
-1.4
-0.3
stress
KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
+0.1
-0.2
-0.2
-0.6
-0.4
stress
KB with Harmol 10 mM
+0.4
-0.1
-0.0
-0.2
-1.2
stress
KB with Anabasine Hydrochloride 10 mM
+0.2
+0.0
-0.1
-0.4
-0.9
kb
KB
+0.2
-0.1
+0.1
-0.7
-0.6
stress
KB with Oxedrine 10 mM
+0.0
-0.0
+0.4
+0.0
-1.2
stress
KB with Escin 10 mM
+0.2
+0.0
+0.1
+0.7
-0.9
in planta
apoplastic, chopping recovery; Green bean
-0.1
+0.1
+0.3
-0.6
+0.6
in planta
apoplastic, chopping recovery; Green bean
-0.5
+0.3
+0.1
-0.1
+0.8
in planta
apoplastic, chopping recovery; Green bean
-0.1
+0.3
+0.3
-0.2
+0.9
in planta
apoplastic; Green bean; 6 days
-0.3
+0.3
+0.4
+1.4
-0.1
in planta
apoplastic; Green bean; 6 days
-0.1
+0.1
+0.4
+1.1
+0.3
in planta
apoplastic, chopping recovery; Green bean
-0.1
+0.5
+0.4
+0.4
+0.7
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