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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4263 and Psyr_4264 are separated by 60 nucleotides
Psyr_4264 and Psyr_4265 are separated by 382 nucleotides
Psyr_4265 and Psyr_4266 are separated by 139 nucleotides
Psyr_4266 and Psyr_4267 are separated by 139 nucleotides
Psyr_4263: Psyr_4263 - transcription elongation factor GreB, at 5,080,858 to 5,081,355
_4263
Psyr_4264: Psyr_4264 - ABC transporter, at 5,081,416 to 5,083,080
_4264
Psyr_4265: Psyr_4265 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 5,083,463 to 5,087,299
_4265
Psyr_4266: Psyr_4266 - transcriptional regulator, LuxR family, at 5,087,439 to 5,088,431
_4266
Psyr_4267: Psyr_4267 - conserved hypothetical protein, at 5,088,571 to 5,089,464
_4267
Group
Condition
Psyr
_4263
Psyr
_4264
Psyr
_4265
Psyr
_4266
Psyr
_4267
stress
KB with Erythromycin 6.25 ug/ml
-0.3
-1.4
+0.1
-0.3
-0.1
stress
KB with Berberine 15.6 ug/ml
+0.0
-1.2
-0.0
-0.1
+0.0
stress
KB with Nitrofurantoin 0.0625 mg/ml
+0.1
-0.8
-0.0
-0.2
-0.2
stress
KB with Flavone 0.125 mg/ml
+0.1
-0.9
-0.0
-0.3
-0.1
stress
KB with Acriflavine 1.25 ug/ml
+0.0
-1.0
+0.0
-0.1
-0.1
stress
KB with Acridine orange 3.125 ug/ml
-0.3
-1.2
+0.2
+0.0
+0.3
stress
KB with Rotenone 0.125 mg/ml
-0.2
-0.2
-0.1
-0.1
-0.2
stress
KB with Levodopa 10 mM
-0.1
-0.6
-0.1
+0.1
+0.0
stress
KB with Phloretin 125 ug/ml
-0.0
-0.6
+0.1
-0.2
+0.0
stress
KB with Palmatine 10 mM
-0.1
-0.7
-0.1
+0.2
+0.1
stress
KB with Avocadyne 10 mM
-0.4
-0.6
-0.1
+0.4
+0.1
stress
KB with Totarol 10 mM
-0.5
-0.2
-0.1
+0.3
-0.1
kb
KB
+0.2
-0.3
+0.0
-0.4
-0.1
stress
KB with Usnic Acid 10 mM
-0.5
-0.2
+0.1
-0.1
+0.1
stress
KB with Nitrofurantoin 31.25 ug/ml
-0.2
-0.5
+0.1
-0.1
+0.1
stress
KB with Harmine 10 mM
+0.3
-1.2
-0.0
+0.1
+0.3
stress
KB with Palmatine chloride 10 mM
-0.0
-0.6
-0.2
+0.2
+0.1
stress
KB with Methanol 5 vol%
+0.3
-0.7
+0.1
-0.1
-0.1
in planta
epiphytic; Lima bean
-0.1
+0.2
-0.1
-0.5
+0.0
stress
KB with Tetracycline 0.0015 ug/ml
-0.1
-0.2
+0.1
-0.3
+0.1
stress
KB with Auraptene 10 mM
-0.2
-0.5
-0.0
+0.3
+0.0
stress
KB with Harmol Hydrochloride 10 mM
-0.4
-0.2
+0.1
+0.1
+0.2
stress
KB with Piperacillin 0.775 ug/ml
+0.2
-0.4
+0.1
-0.2
+0.1
stress
KB with Escin 10 mM
-0.1
-0.6
+0.1
+0.2
+0.1
in planta
apoplastic; Green bean; 6 days
+0.2
-0.6
+0.0
+0.1
+0.2
stress
KB with Oxedrine 10 mM
-0.0
-0.4
+0.1
+0.3
+0.1
stress
KB with Quercetin 360 ug/ml
+0.4
-0.3
+0.1
-0.1
+0.1
stress
KB with Benzalkonium chloride 1.55 ug/ml
+0.2
-0.3
+0.1
-0.1
+0.2
stress
KB with d-limonene 10 mM
-0.2
-0.3
+0.0
+0.4
+0.3
stress
KB with Mitomycin C 0.05 ug/ml
-0.6
+0.4
+0.1
+0.4
+0.2
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