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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4226 and Psyr_4227 are separated by 164 nucleotides
Psyr_4227 and Psyr_4228 are separated by 299 nucleotides
Psyr_4228 and Psyr_4229 are separated by 113 nucleotides
Psyr_4229 and Psyr_4230 are separated by 89 nucleotides
Psyr_4226: Psyr_4226 - D-galactonate transporter, at 5,032,887 to 5,034,272
_4226
Psyr_4227: Psyr_4227 - Dihydrodipicolinate synthetase, at 5,034,437 to 5,035,348
_4227
Psyr_4228: Psyr_4228 - transcriptional regulator, GntR family, at 5,035,648 to 5,036,397
_4228
Psyr_4229: Psyr_4229 - ABC transporter:ABC transporter, N-terminal, at 5,036,511 to 5,038,229
_4229
Psyr_4230: Psyr_4230 - Helix-turn-helix, Fis-type, at 5,038,319 to 5,038,882
_4230
Group
Condition
Psyr
_4226
Psyr
_4227
Psyr
_4228
Psyr
_4229
Psyr
_4230
stress
KB with Nitrofurantoin 31.25 ug/ml
+0.0
-0.0
-0.4
+0.0
-0.7
in planta
apoplastic, chopping recovery; Green bean
+0.1
+0.2
-1.0
-0.1
-0.2
stress
KB with Nitrofurantoin 0.0625 mg/ml
+0.2
+0.2
-0.1
+0.1
-1.3
in planta
apoplastic, chopping recovery; Green bean
+0.1
+0.4
-0.6
-0.0
-0.2
stress
KB with Strychnine Sulfate 10 mM
+0.2
+0.1
-0.3
+0.1
-0.3
stress
KB with Oxonitine 10 mM
+0.2
-0.3
-0.3
+0.2
-0.1
in planta
apoplastic, chopping recovery; Green bean
+0.2
+0.4
-0.7
+0.0
-0.1
stress
KB with Phloretin 125 ug/ml
+0.1
+0.3
-0.5
+0.0
-0.1
stress
KB with Acridine orange 3.125 ug/ml
-0.0
+0.3
+0.2
+0.1
-0.5
stress
KB with Avocadyne 10 mM
+0.2
+0.3
+0.2
+0.0
-0.4
stress
KB with Terpene 10 mM
+0.1
+0.1
-0.1
-0.2
+0.5
stress
KB with Levodopa 10 mM
+0.2
+0.3
-0.3
+0.0
+0.2
stress
KB with Chrysophanol 10 mM
+0.1
+0.3
-0.2
-0.1
+0.5
stress
KB with Palmatine 10 mM
+0.3
+0.4
-0.3
+0.0
+0.1
stress
KB with Auraptene 10 mM
+0.2
+0.2
-0.3
-0.0
+0.4
stress
KB with Anethole 10 mM
+0.1
+0.3
+0.2
-0.2
+0.2
stress
KB with Prenyletin 10 mM
+0.1
+0.3
-0.0
-0.1
+0.4
stress
KB with Physcion 10 mM
+0.3
+0.3
+0.3
-0.2
+0.0
stress
KB with Solanesol 10 mM
+0.2
+0.3
-0.1
+0.1
+0.3
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.1
+0.5
-0.1
-0.0
+0.3
stress
KB with Paclitaxel 10 mM
+0.2
+0.3
-0.1
-0.1
+0.4
kb
KB
+0.3
+0.3
+0.0
-0.1
+0.3
stress
KB with L-alliin 10 mM
+0.1
+0.3
+0.1
-0.1
+0.4
stress
KB with Conessine 10 mM
+0.2
+0.3
-0.1
+0.0
+0.5
stress
KB with Emodin 10 mM
+0.2
+0.4
+0.1
+0.0
+0.3
stress
KB with Curcumin 10 mM
+0.2
+0.2
+0.4
-0.1
+0.2
stress
KB with Piperic 10 mM
+0.1
+0.5
+0.0
-0.0
+0.4
stress
KB with Helenine 10 mM
+0.3
+0.4
+0.0
-0.1
+0.4
stress
KB with Chaulmoogric 10 mM
+0.2
+0.3
+0.1
+0.1
+0.3
kb
KB
+0.2
+0.4
+0.2
+0.0
+0.4
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