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Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_4008 and Psyr_4009 overlap by 4 nucleotides
Psyr_4009 and Psyr_4010 are separated by 63 nucleotides
Psyr_4010 and Psyr_4011 are separated by 211 nucleotides
Psyr_4011 and Psyr_4012 overlap by 1 nucleotides
Psyr_4008: Psyr_4008 - Hydrophobe/amphiphile efflux-1 HAE1, at 4,772,247 to 4,775,381
_4008
Psyr_4009: Psyr_4009 - RND efflux system, outer membrane lipoprotein, NodT, at 4,775,378 to 4,776,838
_4009
Psyr_4010: Psyr_4010 - Citrate-proton symport, at 4,776,902 to 4,778,203
_4010
Psyr_4011: Psyr_4011 - Thiolase, at 4,778,415 to 4,779,614
_4011
Psyr_4012: Psyr_4012 - Glutaconate CoA-transferase, at 4,779,614 to 4,780,393
_4012
Group
Condition
Psyr
_4008
Psyr
_4009
Psyr
_4010
Psyr
_4011
Psyr
_4012
stress
KB with Acridine orange 3.125 ug/ml
N.D.
-0.1
-0.2
-2.3
-0.2
stress
KB with Tetracycline 0.0015 ug/ml
N.D.
-0.0
-0.1
-1.5
-0.7
in planta
apoplastic, chopping recovery; Green bean
N.D.
-0.0
+0.0
-0.7
-0.8
in planta
apoplastic; Green bean; 6 days
N.D.
-0.1
+0.1
-0.1
-1.2
in planta
apoplastic, chopping recovery; Green bean
N.D.
+0.1
+0.0
-0.6
-0.9
stress
KB with Carbenicillin 3.1 ug/ml
N.D.
+0.4
+0.2
-1.3
-0.7
stress
KB with Benzalkonium chloride 1.55 ug/ml
N.D.
+0.2
+0.1
-1.5
-0.0
stress
KB with Nalidixic 0.775 ug/ml
N.D.
-0.2
-0.0
-1.1
+0.2
stress
KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
N.D.
-0.1
+0.0
+0.7
-0.8
stress
KB with Paclitaxel 10 mM
N.D.
-0.0
+0.0
+0.9
-0.5
stress
KB with Levodopa 10 mM
N.D.
+0.1
-0.1
+1.0
-0.4
stress
KB with Isosafrole 10 mM
N.D.
+0.0
+0.1
+0.9
-0.4
stress
KB with Dimethyl Sulfoxide 1.25 vol%
N.D.
-0.1
-0.1
+1.2
-0.1
stress
KB with Piperine 10 mM
N.D.
+0.2
-0.1
+1.2
-0.3
stress
KB with Curcumin 10 mM
N.D.
+0.3
-0.1
+0.8
-0.1
stress
KB with Veratrine 10 mM
N.D.
+0.2
-0.1
+1.3
-0.5
stress
KB with Avocadyne 10 mM
N.D.
+0.1
-0.2
+0.9
+0.2
stress
KB with Oxedrine 10 mM
N.D.
+0.2
+0.1
+0.9
-0.3
stress
KB with Terpene 10 mM
N.D.
-0.0
-0.1
+1.2
+0.0
stress
KB with Conessine 10 mM
N.D.
+0.2
-0.1
+0.7
+0.2
stress
KB with Harmol 10 mM
N.D.
+0.2
+0.0
+1.1
-0.2
stress
KB with Cotarnine Chloride 10 mM
N.D.
+0.1
-0.0
+1.2
-0.2
stress
KB with Lupeol 10 mM
N.D.
+0.1
-0.1
+1.0
+0.2
stress
KB with Palmatine chloride 10 mM
N.D.
-0.0
+0.0
+0.7
+0.5
kb
KB
N.D.
-0.1
-0.1
+1.2
+0.1
stress
KB with Chrysophanol 10 mM
N.D.
-0.0
-0.0
+1.3
-0.0
stress
KB with Lawsone 10 mM
N.D.
+0.0
-0.1
+1.4
-0.1
stress
KB with Gossypetin 10 mM
N.D.
+0.0
-0.1
+1.1
+0.2
stress
KB with Helenine 10 mM
N.D.
-0.1
-0.1
+1.2
+0.3
stress
KB with L-alliin 10 mM
N.D.
+0.1
-0.1
+1.6
+0.3
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