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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_3049 and Psyr_3050 are separated by 67 nucleotides
Psyr_3050 and Psyr_3051 are separated by 125 nucleotides
Psyr_3051 and Psyr_3052 are separated by 13 nucleotides
Psyr_3052 and Psyr_3053 overlap by 4 nucleotides
Psyr_3049: Psyr_3049 - Pirin, N-terminal, at 3,646,873 to 3,647,709
_3049
Psyr_3050: Psyr_3050 - Aldo/keto reductase, at 3,647,777 to 3,648,640
_3050
Psyr_3051: Psyr_3051 - transcriptional regulator, LysR family, at 3,648,766 to 3,649,662
_3051
Psyr_3052: Psyr_3052 - Na+/solute symporter, at 3,649,676 to 3,651,205
_3052
Psyr_3053: Psyr_3053 - conserved hypothetical protein, at 3,651,202 to 3,651,462
_3053
Group
Condition
Psyr
_3049
Psyr
_3050
Psyr
_3051
Psyr
_3052
Psyr
_3053
stress
KB with Biochanin a diacetate 10 mM
-0.2
-0.3
-0.7
+0.1
-0.2
stress
KB with Curcumin 10 mM
-0.0
-0.2
-0.5
+0.0
-0.6
stress
KB with Lawsone 10 mM
-0.3
-0.4
-0.6
+0.1
-0.1
stress
KB with Auraptene 10 mM
-0.1
+0.1
-0.1
-0.1
-0.9
stress
KB with Solanesol 10 mM
-0.2
-0.4
-0.2
+0.1
-0.2
kb
KB
-0.2
-0.4
-0.3
+0.1
-0.2
stress
KB with Chloramphenicol 1.55 ug/ml
-0.2
+0.2
+0.0
+0.1
-0.9
stress
KB with Veratrine 10 mM
-0.3
-0.3
+0.2
-0.1
-0.3
stress
KB with Acriflavine 1.25 ug/ml
+0.2
-0.1
-0.1
+0.2
-0.8
stress
KB with Mitomycin C 0.05 ug/ml
-0.5
-0.6
+0.2
+0.3
-0.0
stress
KB with Emodin 10 mM
-0.3
-0.1
+0.4
-0.2
-0.4
stress
KB with Nitrofurantoin 0.0625 mg/ml
-0.2
+0.4
+0.0
-0.5
-0.2
stress
KB with Lupeol 10 mM
-0.3
-0.5
+0.7
+0.1
-0.5
stress
KB with d-limonene 10 mM
-0.6
-0.1
+0.3
+0.1
-0.2
stress
KB with Sinomenine 10 mM
-0.0
+0.3
+0.1
+0.2
-0.7
stress
KB with Rotenone 0.25 mg/ml
-0.3
+0.1
+0.1
-0.3
+0.5
stress
KB with Rotenone 0.125 mg/ml
-0.2
+0.2
+0.4
-0.4
+0.1
in planta
epiphytic; Lima bean
-0.1
-0.6
+0.4
+0.1
+0.5
stress
KB with Usnic Acid 10 mM
-0.1
+0.3
+0.4
+0.0
-0.3
in planta
Green bean; epiphytic
+0.2
+0.4
-0.3
+0.2
-0.1
stress
KB with Cotarnine Chloride 10 mM
+0.0
+0.5
+0.4
+0.1
-0.2
stress
KB with Carbenicillin 3.1 ug/ml
+0.5
-0.1
+0.4
+0.0
+0.2
stress
KB with Methanol 5 vol%
-0.1
+0.3
+0.3
+0.0
+0.4
in planta
apoplastic, chopping recovery; Green bean
-0.2
+0.6
+0.3
+0.4
+0.2
in planta
apoplastic, chopping recovery; Green bean
-0.1
+0.5
+0.6
+0.4
-0.0
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
+0.2
+0.5
+0.4
+0.2
+0.1
stress
KB with Benzalkonium chloride 1.55 ug/ml
+0.1
+0.1
+0.7
-0.0
+0.6
in planta
apoplastic; Green bean; 6 days
-0.2
+0.7
+0.1
+0.0
+0.8
in planta
apoplastic; Green bean; 6 days
-0.3
+0.7
+0.1
+0.1
+0.9
in planta
apoplastic, chopping recovery; Green bean
-0.0
+0.4
+0.7
+0.3
+0.4
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