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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2686 and Psyr_2687 are separated by 142 nucleotides
Psyr_2687 and Psyr_2688 are separated by 108 nucleotides
Psyr_2688 and Psyr_2689 are separated by 964 nucleotides
Psyr_2689 and Psyr_2690 overlap by 4 nucleotides
Psyr_2686: Psyr_2686 - carbamate kinase, at 3,261,073 to 3,262,002
_2686
Psyr_2687: Psyr_2687 - PepSY-associated TM helix, at 3,262,145 to 3,263,539
_2687
Psyr_2688: Psyr_2688 - conserved hypothetical protein, at 3,263,648 to 3,264,058
_2688
Psyr_2689: Psyr_2689 - DegT/DnrJ/EryC1/StrS aminotransferase, at 3,265,023 to 3,266,171
_2689
Psyr_2690: Psyr_2690 - Glycosyl transferase, family 2, at 3,266,168 to 3,267,181
_2690
Group
Condition
Psyr
_2686
Psyr
_2687
Psyr
_2688
Psyr
_2689
Psyr
_2690
stress
KB with Piperine 10 mM
-0.0
-0.1
-0.2
-0.7
-0.6
stress
KB with Palmatine chloride 10 mM
-0.0
-0.2
-0.1
-0.9
-0.2
stress
KB with L-alliin 10 mM
+0.1
-0.3
-0.3
-0.3
-0.3
stress
KB with Harmine 10 mM
-0.0
+0.0
-0.5
-0.2
-0.2
stress
KB with Avocatin A 10 mM
-0.0
-0.2
-0.4
-0.1
-0.2
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.0
+0.1
-0.8
-0.3
+0.1
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.1
+0.1
-0.4
-0.2
-0.4
stress
KB with Sinomenine 10 mM
-0.2
+0.1
-0.8
-0.0
+0.2
stress
KB with Gossypetin 10 mM
+0.2
-0.2
-0.5
-0.4
+0.1
stress
KB with Conessine 10 mM
+0.2
-0.2
-0.3
-0.3
-0.3
stress
KB with Levodopa 10 mM
+0.2
-0.1
-0.4
-0.4
-0.1
stress
KB with Biochanin a diacetate 10 mM
+0.2
-0.2
-0.3
-0.4
+0.1
stress
KB with Terpene 10 mM
+0.2
+0.0
-0.4
-0.5
+0.2
in planta
epiphytic; Lima bean
-0.1
+0.1
+0.1
+0.2
-0.6
stress
KB with Sclareolide 10 mM
+0.3
-0.2
-0.1
-0.3
-0.1
stress
KB with d-limonene 10 mM
-0.0
-0.3
+0.3
-0.3
-0.1
stress
KB with Anabasine Hydrochloride 10 mM
+0.0
+0.1
-0.5
-0.3
+0.2
in planta
apoplastic, chopping recovery; Green bean
+0.2
-0.0
-0.5
-0.4
+0.4
stress
KB with Oxedrine 10 mM
+0.1
+0.3
+0.2
-0.1
-0.6
in planta
apoplastic, chopping recovery; Green bean
+0.2
-0.2
-0.1
-0.2
+0.3
stress
KB with Rotenone 0.125 mg/ml
+0.1
+0.1
-0.1
+0.4
-0.3
stress
KB with Tetracycline 0.0015 ug/ml
+0.2
+0.3
+0.3
-0.4
-0.0
stress
KB with Mitomycin C 0.05 ug/ml
-0.3
+0.5
-0.2
+0.2
+0.3
stress
KB with Phloretin 125 ug/ml
+0.1
+0.1
+0.4
+0.1
-0.3
stress
KB with Harmol 10 mM
+0.2
+0.2
+0.3
-0.2
+0.2
stress
KB with Methanol 5 vol%
+0.3
-0.2
+0.4
+0.1
+0.1
in planta
epiphytic; Lima bean
-0.3
+0.2
+0.6
+0.3
+0.1
in planta
apoplastic; Green bean; 6 days
-0.0
+0.0
+0.6
-0.0
+0.5
stress
KB with Trimethoprim 15.6 ug/ml
+0.3
+0.3
+0.4
+0.2
+0.2
stress
KB with Carbenicillin 3.1 ug/ml
+0.2
-0.0
+0.5
+0.7
-0.0
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