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Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2478 and Psyr_2479 are separated by 5 nucleotides
Psyr_2479 and Psyr_2480 are separated by 119 nucleotides
Psyr_2480 and Psyr_2481 are separated by 90 nucleotides
Psyr_2481 and Psyr_2482 are separated by 153 nucleotides
Psyr_2478: Psyr_2478 - surface antigen (D15):Surface antigen variable number, at 2,872,283 to 2,874,007
_2478
Psyr_2479: Psyr_2479 - Protein of unknown function DUF490, at 2,874,013 to 2,877,693
_2479
Psyr_2480: Psyr_2480 - transcriptional regulator, LysR family, at 2,877,813 to 2,878,730
_2480
Psyr_2481: Psyr_2481 - thiol peroxidase (atypical 2-Cys peroxiredoxin), at 2,878,821 to 2,879,321
_2481
Psyr_2482: Psyr_2482 - Secretion protein HlyD, at 2,879,475 to 2,880,779
_2482
Group
Condition
Psyr
_2478
Psyr
_2479
Psyr
_2480
Psyr
_2481
Psyr
_2482
stress
KB with Carbenicillin 3.1 ug/ml
-0.3
-0.2
-0.1
-0.0
-3.5
in planta
Green bean; epiphytic
-0.3
-0.1
+0.1
+0.2
-2.6
stress
KB with Berberine 15.6 ug/ml
+0.0
-0.2
+0.1
-0.4
-2.1
stress
KB with Piperine 10 mM
-0.5
+0.5
-0.7
-0.3
-1.6
stress
KB with Quercetin 360 ug/ml
-0.6
+0.0
-0.6
-0.2
-1.1
stress
KB with Rifampicin 0.1 mg/ml
-0.2
-0.2
-0.4
-0.2
-1.4
stress
KB with Acriflavine 1.25 ug/ml
-0.5
+0.1
-0.6
+0.9
-2.0
stress
KB with Erythromycin 6.25 ug/ml
+0.1
+0.0
-0.3
-0.1
-1.5
in planta
Green bean; epiphytic
-0.4
-0.3
+0.7
-0.3
-1.5
stress
KB with Escin 10 mM
-0.7
+0.2
-0.7
+0.2
-0.3
kb
KB
+0.0
+0.0
+0.6
-0.7
-1.2
stress
KB with Piperic 10 mM
+0.0
+0.4
+0.2
-0.6
-1.0
stress
KB with Biochanin a diacetate 10 mM
+0.1
+0.3
+0.4
-0.6
-1.0
stress
KB with Palmatine 10 mM
-0.3
+0.3
+0.6
+0.5
-1.8
stress
KB with Levodopa 10 mM
+0.2
+0.5
+0.4
-0.3
-1.2
stress
KB with Novobiocin 7.75 ug/ml
-0.9
-0.5
+1.3
+0.6
-0.9
stress
KB with Chaulmoogric 10 mM
+0.2
+0.4
+0.4
-0.0
-1.1
stress
KB with Conessine 10 mM
+0.0
+0.1
+0.9
-0.5
-0.7
stress
KB with d-limonene 10 mM
+0.1
+0.4
+0.4
-0.7
-0.5
stress
KB with Chrysophanol 10 mM
-0.2
+0.7
+0.2
-0.2
-0.7
stress
KB with Lupeol 10 mM
+0.2
+0.5
+0.6
-0.3
-1.1
in planta
epiphytic; Lima bean
-0.0
-0.2
-0.2
-0.7
+1.1
stress
KB with Veratrine 10 mM
-0.3
+0.2
+0.9
-0.1
-0.6
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.2
+0.3
+0.7
-0.3
-0.8
stress
KB with Nonanoic 10 mM
+0.1
+0.3
+0.8
-0.2
-0.8
stress
KB with Harmol 10 mM
-0.5
+0.5
+0.7
+0.1
-0.3
stress
KB with Palmatine chloride 10 mM
-0.4
+0.3
+1.1
+0.2
-0.6
stress
KB with Terpene 10 mM
-0.2
+0.4
+0.9
+0.0
-0.4
stress
KB with Mitomycin C 0.05 ug/ml
-0.7
+0.3
+1.1
+1.5
+1.2
stress
KB with Acridine orange 3.125 ug/ml
-0.6
+0.0
+1.4
+1.5
+1.1
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