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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2224 and Psyr_2225 overlap by 19 nucleotides
Psyr_2225 and Psyr_2226 overlap by 4 nucleotides
Psyr_2226 and Psyr_2227 are separated by 297 nucleotides
Psyr_2227 and Psyr_2228 are separated by 399 nucleotides
Psyr_2224: Psyr_2224 - FAD dependent oxidoreductase, at 2,585,630 to 2,586,871
_2224
Psyr_2225: Psyr_2225 - methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+), at 2,586,853 to 2,587,755
_2225
Psyr_2226: Psyr_2226 - formyltetrahydrofolate deformylase, at 2,587,752 to 2,588,618
_2226
Psyr_2227: Psyr_2227 - conserved hypothetical protein, at 2,588,916 to 2,589,371
_2227
Psyr_2228: Psyr_2228 - conserved hypothetical protein, at 2,589,771 to 2,590,499
_2228
Group
Condition
Psyr
_2224
Psyr
_2225
Psyr
_2226
Psyr
_2227
Psyr
_2228
stress
KB with Methanol 5 vol%
-0.2
-0.5
-0.6
-2.0
-0.4
stress
KB with Veratrine 10 mM
+0.3
-0.1
-0.6
-2.2
-0.7
stress
KB with Mitomycin C 0.05 ug/ml
+0.1
-0.1
-0.7
-2.5
+0.1
stress
KB with Hydrastine (1R, 9S) 10 mM
-0.1
+0.3
-0.6
-1.9
-0.9
stress
KB with Tetracycline 0.0015 ug/ml
+0.3
-0.3
-0.5
-2.3
-0.2
stress
KB with Quercetin 360 ug/ml
-0.1
-0.3
-0.1
-2.3
-0.2
stress
KB with Strychnine Sulfate 10 mM
-0.0
-0.0
-0.1
-3.4
+0.6
stress
KB with D-Salicin 240 ug/ml
-0.1
-0.4
+0.0
-2.2
-0.2
stress
KB with Chrysophanol 10 mM
+0.1
+0.1
-0.4
-2.0
-0.7
stress
KB with d-limonene 10 mM
-0.2
-0.1
-1.0
-0.6
-1.0
in planta
apoplastic, chopping recovery; Green bean
+0.0
-0.8
+0.0
-2.0
-0.1
in planta
apoplastic, chopping recovery; Green bean
-0.2
-0.8
-0.2
-1.5
+0.0
stress
KB with Trimethoprim 15.6 ug/ml
+0.0
-0.2
+0.0
-2.5
-0.0
stress
KB with Gossypol-Acetic Acid Complex 10 mM
+0.0
-0.1
-0.1
-2.6
+0.2
stress
KB with Novobiocin 7.75 ug/ml
-0.0
+0.2
-0.7
-1.8
-0.3
stress
KB with Piperine 10 mM
+0.1
-0.0
-0.6
-1.9
-0.1
stress
KB with Benzalkonium chloride 1.55 ug/ml
-0.0
-0.2
-0.5
-1.8
-0.0
kb
KB
-0.0
-0.1
-0.7
-1.1
-0.6
stress
KB with Lupeol 10 mM
+0.1
+0.1
-0.5
-1.7
-0.5
stress
KB with Anabasine Hydrochloride 10 mM
+0.0
+0.0
-0.1
-1.9
-0.4
stress
KB with Conessine 10 mM
+0.1
+0.2
-0.8
-0.6
-1.1
in planta
epiphytic; Lima bean
+0.3
-1.5
-0.2
-1.0
+0.1
stress
KB with Isosafrole 10 mM
+0.1
-0.2
+0.2
-2.7
+0.4
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.2
+0.5
-0.4
-1.6
-0.7
stress
KB with 4-hydroxychalcone 10 mM
-0.0
+0.3
-0.7
-0.8
-0.9
stress
KB with Escin 10 mM
+0.3
-0.4
-0.4
-1.6
+0.3
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
-0.2
+0.2
-0.3
-1.7
+0.1
stress
KB with Palmatine 10 mM
+0.3
+0.3
-0.8
-1.0
-0.4
stress
KB with Avocatin A 10 mM
+0.3
+0.3
-0.5
-0.6
-0.8
stress
KB with Acridine orange 3.125 ug/ml
+0.6
+0.1
-0.9
-1.5
+0.5
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