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Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2207 and Psyr_2208 are separated by 223 nucleotides
Psyr_2208 and Psyr_2209 are separated by 60 nucleotides
Psyr_2209 and Psyr_2210 are separated by 76 nucleotides
Psyr_2210 and Psyr_2211 overlap by 4 nucleotides
Psyr_2207: Psyr_2207 - ANTAR, at 2,564,725 to 2,565,357
_2207
Psyr_2208: Psyr_2208 - Amidase, at 2,565,581 to 2,567,116
_2208
Psyr_2209: Psyr_2209 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 2,567,177 to 2,568,151
_2209
Psyr_2210: Psyr_2210 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 2,568,228 to 2,569,187
_2210
Psyr_2211: Psyr_2211 - monooxygenase, NtaA/SnaA/SoxA family, at 2,569,184 to 2,570,530
_2211
Group
Condition
Psyr
_2207
Psyr
_2208
Psyr
_2209
Psyr
_2210
Psyr
_2211
in planta
epiphytic; Lima bean
N.D.
-0.5
-0.7
-1.0
-0.2
in planta
epiphytic; Lima bean
N.D.
+0.1
-0.7
-0.5
-1.0
stress
KB with L-alliin 10 mM
N.D.
-0.2
-0.4
-1.1
-0.2
stress
KB with Palmatine 10 mM
N.D.
-0.6
-0.2
-0.4
-0.3
stress
KB with Harmol 10 mM
N.D.
+0.1
-0.2
-1.1
-0.2
stress
KB with Avocatin A 10 mM
N.D.
-0.2
-0.6
-0.1
-0.5
stress
KB with Nonanoic 10 mM
N.D.
-0.1
-0.4
-0.4
-0.2
stress
KB with Harmine 10 mM
N.D.
+0.4
-0.5
-0.4
-0.3
stress
KB with Diallyl sulfide 10 mM
N.D.
+0.1
-0.8
+0.1
-0.3
stress
KB with Prenyletin 10 mM
N.D.
+0.2
-0.2
-0.7
-0.1
stress
KB with Totarol 10 mM
N.D.
-0.3
+0.1
-0.4
-0.3
stress
KB with capsaicin 0.125 mg/ml
N.D.
-0.3
-0.3
-0.4
+0.2
stress
KB with Gossypetin 10 mM
N.D.
+0.1
-0.2
-0.5
-0.4
stress
KB with Chaulmoogric 10 mM
N.D.
-0.1
-0.3
-0.6
+0.3
stress
KB with Carbenicillin 3.1 ug/ml
N.D.
+0.0
+0.4
-1.0
+0.0
stress
KB with Biochanin a diacetate 10 mM
N.D.
-0.4
+0.2
-0.5
+0.2
in planta
apoplastic, chopping recovery; Green bean
N.D.
+0.0
+0.2
+0.1
-0.8
stress
KB with Piperic 10 mM
N.D.
+0.1
-0.3
-0.5
+0.4
stress
KB with Acridine orange 3.125 ug/ml
N.D.
+0.7
+0.1
-0.9
-0.2
stress
KB with Piperacillin 0.775 ug/ml
N.D.
+0.3
-0.1
-0.8
+0.3
stress
KB with Piperine 10 mM
N.D.
-0.4
-0.2
-0.2
+0.6
in planta
apoplastic, chopping recovery; Green bean
N.D.
-0.1
+0.2
+0.3
-0.6
stress
KB with Dimethyl Sulfoxide 1.25 vol%
N.D.
-0.2
-0.3
+0.4
+0.2
in planta
Green bean; epiphytic
N.D.
+0.1
+0.5
+0.1
-0.5
kb
KB
N.D.
+0.1
+0.1
-0.5
+0.6
stress
KB with Nitrofurantoin 31.25 ug/ml
N.D.
+0.3
+0.3
-0.6
+0.4
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
N.D.
+0.3
+0.1
+0.4
-0.3
stress
KB with Mitomycin C 0.05 ug/ml
N.D.
+0.6
+0.4
-0.3
-0.2
stress
KB with Cotarnine Chloride 10 mM
N.D.
-0.1
+0.0
+0.6
+0.3
stress
KB with Acriflavine 1.25 ug/ml
N.D.
+0.5
+0.2
-0.0
+0.6
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