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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2189 and Psyr_2190 are separated by 59 nucleotides
Psyr_2190 and Psyr_2191 are separated by 38 nucleotides
Psyr_2191 and Psyr_2192 are separated by 87 nucleotides
Psyr_2192 and Psyr_2193 are separated by 77 nucleotides
Psyr_2189: Psyr_2189 - transcriptional regulator, ArsR family, at 2,544,729 to 2,545,064
_2189
Psyr_2190: Psyr_2190 - NADH:flavin oxidoreductase/NADH oxidase, at 2,545,124 to 2,546,215
_2190
Psyr_2191: Psyr_2191 - RND efflux system, outer membrane lipoprotein, NodT, at 2,546,254 to 2,547,726
_2191
Psyr_2192: Psyr_2192 - transcriptional regulator, TetR family, at 2,547,814 to 2,548,428
_2192
Psyr_2193: Psyr_2193 - Secretion protein HlyD, at 2,548,506 to 2,549,609
_2193
Group
Condition
Psyr
_2189
Psyr
_2190
Psyr
_2191
Psyr
_2192
Psyr
_2193
kb
KB
-0.4
N.D.
-0.3
-0.5
-0.4
stress
KB with Veratrine 10 mM
-0.7
N.D.
-0.2
-0.1
-0.2
stress
KB with Benzalkonium chloride 1.55 ug/ml
-0.6
N.D.
-0.1
-0.5
+0.1
stress
KB with Harmol 10 mM
+0.3
N.D.
-0.7
-0.2
-0.5
stress
KB with Erythromycin 6.25 ug/ml
-0.5
N.D.
-0.1
-0.3
-0.2
stress
KB with Acridine orange 3.125 ug/ml
-0.9
N.D.
+0.5
-0.5
-0.2
stress
KB with Paclitaxel 10 mM
-0.5
N.D.
-0.2
-0.5
+0.1
stress
KB with Palmatine 10 mM
-0.4
N.D.
+0.0
-0.3
-0.4
stress
KB with capsaicin 0.125 mg/ml
-0.6
N.D.
+0.1
-0.3
-0.3
stress
KB with Piperine 10 mM
-0.5
N.D.
-0.2
-0.2
-0.1
stress
KB with Mitomycin C 0.05 ug/ml
-0.3
N.D.
+0.1
-0.8
+0.1
kb
KB
-0.3
N.D.
+0.0
-0.5
-0.2
stress
KB with Oxonitine 10 mM
-1.1
N.D.
+0.1
-0.3
+0.3
stress
KB with Totarol 10 mM
-0.2
N.D.
+0.2
-0.5
-0.5
stress
KB with Prenyletin 10 mM
+0.1
N.D.
-0.1
-0.6
-0.3
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.4
N.D.
+0.1
-0.7
-0.5
stress
KB with Emodin 10 mM
+0.1
N.D.
+0.1
-0.6
-0.2
in planta
apoplastic, chopping recovery; Green bean
+0.1
N.D.
+0.1
-0.8
+0.0
stress
KB with Levodopa 10 mM
+0.0
N.D.
+0.3
-0.5
-0.3
in planta
epiphytic; Lima bean
-0.3
N.D.
-0.0
-0.4
+0.3
stress
KB with Usnic Acid 10 mM
-0.5
N.D.
+0.2
-0.3
+0.3
in planta
apoplastic, chopping recovery; Green bean
-0.0
N.D.
+0.1
-0.6
+0.3
in planta
apoplastic, chopping recovery; Green bean
-0.1
N.D.
+0.4
-0.6
+0.2
stress
KB with Oxedrine 10 mM
-0.4
N.D.
+0.4
-0.4
+0.4
in planta
Green bean; epiphytic
-0.1
N.D.
+0.5
-0.3
+0.3
stress
KB with Novobiocin 7.75 ug/ml
+0.4
N.D.
+0.2
+0.2
-0.3
stress
KB with Carbenicillin 3.1 ug/ml
+0.2
N.D.
-0.3
+0.1
+0.5
in planta
Green bean; epiphytic
-0.2
N.D.
+0.5
-0.1
+0.3
stress
KB with Escin 10 mM
+0.3
N.D.
+0.4
-0.5
+0.5
stress
KB with Harmine 10 mM
+0.2
N.D.
-0.0
+1.0
+0.3
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