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Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2108 and Psyr_2109 are separated by 514 nucleotides
Psyr_2109 and Psyr_2110 are separated by 165 nucleotides
Psyr_2110 and Psyr_2111 are separated by 52 nucleotides
Psyr_2111 and Psyr_2112 are separated by 338 nucleotides
Psyr_2108: Psyr_2108 - 23S rRNA m(2)G-2445 methyltransferase, at 2,460,168 to 2,462,420
_2108
Psyr_2109: Psyr_2109 - methyl-accepting chemotaxis sensory transducer, at 2,462,935 to 2,464,554
_2109
Psyr_2110: Psyr_2110 - diguanylate cyclase with PAS/PAC sensor, at 2,464,720 to 2,467,110
_2110
Psyr_2111: Psyr_2111 - Peptidase S13, D-Ala-D-Ala carboxypeptidase C, at 2,467,163 to 2,468,629
_2111
Psyr_2112: Psyr_2112 - Protein with unknown function DUF469, at 2,468,968 to 2,469,312
_2112
Group
Condition
Psyr
_2108
Psyr
_2109
Psyr
_2110
Psyr
_2111
Psyr
_2112
stress
KB with Carbenicillin 3.1 ug/ml
-0.2
-0.4
-0.1
-2.6
N.D.
stress
KB with Escin 10 mM
-0.0
-1.3
+0.0
-0.1
N.D.
stress
KB with Erythromycin 6.25 ug/ml
-0.4
-0.9
+0.1
-0.3
N.D.
stress
KB with Strychnine Sulfate 10 mM
+0.4
-0.5
-0.1
-0.6
N.D.
stress
KB with Oxedrine 10 mM
-0.0
-0.8
+0.0
+0.0
N.D.
stress
KB with Acriflavine 1.25 ug/ml
+0.1
-0.6
-0.0
-0.2
N.D.
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.1
-0.8
+0.0
+0.1
N.D.
stress
KB with Dimethyl Sulfoxide 0.42 vol%
+0.2
-1.0
+0.0
+0.2
N.D.
stress
KB with Tetracycline 0.0015 ug/ml
-0.1
-0.7
+0.1
+0.2
N.D.
stress
KB with Harmol Hydrochloride 10 mM
+0.3
-0.5
-0.0
-0.2
N.D.
stress
KB with Avocadene 10 mM
+0.2
-0.8
-0.0
+0.1
N.D.
stress
KB with Isosafrole 10 mM
+0.2
-0.6
+0.0
-0.1
N.D.
stress
KB with Avocadyne 10 mM
+0.2
-0.4
+0.1
-0.4
N.D.
stress
KB with Palmatine chloride 10 mM
+0.2
-0.3
+0.1
-0.3
N.D.
stress
KB with Oxonitine 10 mM
+0.4
-0.5
+0.0
-0.2
N.D.
stress
KB with Quercetin 360 ug/ml
+0.2
-0.4
+0.2
-0.3
N.D.
stress
KB with Cotarnine Chloride 10 mM
+0.2
-0.4
+0.2
-0.3
N.D.
stress
KB with Novobiocin 7.75 ug/ml
+0.3
-0.9
-0.0
+0.3
N.D.
stress
KB with Phloretin 125 ug/ml
+0.4
-0.8
+0.2
+0.1
N.D.
stress
KB with Anabasine Hydrochloride 10 mM
+0.2
-0.5
+0.0
+0.2
N.D.
stress
KB with Totarol 10 mM
+0.2
-0.3
-0.2
+0.3
N.D.
stress
KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
+0.3
-0.5
+0.2
-0.0
N.D.
stress
KB with Gossypol-Acetic Acid Complex 10 mM
+0.5
-0.6
+0.1
+0.1
N.D.
stress
KB with Mitomycin C 0.05 ug/ml
+0.2
-0.6
+0.0
+0.5
N.D.
stress
KB with Trimethoprim 15.6 ug/ml
+0.2
-0.7
+0.1
+0.5
N.D.
stress
KB with Nitrofurantoin 31.25 ug/ml
+0.3
-0.6
+0.1
+0.3
N.D.
in planta
apoplastic, chopping recovery; Green bean
+0.2
-0.4
+0.3
+0.2
N.D.
stress
KB with Nalidixic 0.775 ug/ml
+0.3
-0.4
+0.1
+0.4
N.D.
in planta
apoplastic, chopping recovery; Green bean
+0.1
-0.2
+0.2
+0.5
N.D.
in planta
epiphytic; Lima bean
+0.6
+0.0
+0.2
+0.6
N.D.
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