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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2024 and Psyr_2025 are separated by 62 nucleotides
Psyr_2025 and Psyr_2026 are separated by 250 nucleotides
Psyr_2026 and Psyr_2027 overlap by 4 nucleotides
Psyr_2027 and Psyr_2028 are separated by 127 nucleotides
Psyr_2024: Psyr_2024 - Phosphohistidine phosphatase SixA, at 2,349,422 to 2,349,877
_2024
Psyr_2025: Psyr_2025 - Phenylacetic acid degradation-related protein, at 2,349,940 to 2,350,383
_2025
Psyr_2026: Psyr_2026 - conserved hypothetical protein, at 2,350,634 to 2,351,443
_2026
Psyr_2027: Psyr_2027 - epoxide hydrolase, Serine peptidase, MEROPS family S33, at 2,351,440 to 2,352,294
_2027
Psyr_2028: Psyr_2028 - conserved hypothetical protein, at 2,352,422 to 2,353,252
_2028
Group
Condition
Psyr
_2024
Psyr
_2025
Psyr
_2026
Psyr
_2027
Psyr
_2028
in planta
apoplastic, chopping recovery; Green bean
+0.1
-0.1
-1.0
-0.3
-0.4
in planta
apoplastic, chopping recovery; Green bean
+0.1
-0.4
-1.0
-0.0
-0.0
stress
KB with Benzalkonium chloride 1.55 ug/ml
-0.2
-0.9
+0.4
-0.1
-0.3
stress
KB with Acridine orange 3.125 ug/ml
-0.1
-0.7
-0.3
+0.2
-0.2
stress
KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
+0.2
-0.5
-0.4
-0.0
+0.4
stress
KB with Carbenicillin 3.1 ug/ml
-0.4
-0.3
-0.2
+0.4
+0.3
stress
KB with Tetracycline 0.0015 ug/ml
-0.3
-0.6
+0.2
+0.3
+0.3
stress
KB with Harmol Hydrochloride 10 mM
+0.1
-0.7
-0.1
-0.3
+0.9
stress
KB with Oxedrine 10 mM
+0.2
-0.1
-0.9
+0.3
+0.4
stress
KB with Solanesol 10 mM
-0.4
+0.1
-0.5
+0.6
+0.1
stress
KB with 4-acetoxyphenol 10 mM
-0.1
+0.4
-0.1
+0.6
-0.8
stress
KB with Avocadyne 10 mM
-0.2
+0.2
-0.6
+0.6
+0.1
stress
KB with Chloramphenicol 1.55 ug/ml
+0.1
+0.1
-0.6
+0.1
+0.6
stress
KB with Nitrofurantoin 31.25 ug/ml
-0.2
+0.1
-0.3
+0.2
+0.6
stress
KB with Rotenone 0.125 mg/ml
+0.2
-0.3
-0.2
+0.3
+0.4
stress
KB with Palmatine 10 mM
+0.0
-0.7
-0.3
+1.1
+0.5
stress
KB with Diallyl sulfide 10 mM
-0.1
-0.4
+0.1
+0.9
+0.3
stress
KB with Sclareolide 10 mM
+0.1
-0.4
+0.3
+0.6
+0.2
stress
KB with Palmatine chloride 10 mM
-0.3
-0.1
+0.1
+0.8
+0.4
stress
KB with Chrysophanol 10 mM
-0.1
+0.3
-0.4
+0.9
+0.2
stress
KB with Lawsone 10 mM
+0.1
+0.2
-0.4
+0.6
+0.5
stress
KB with Terpene 10 mM
-0.2
-0.1
+0.1
+0.8
+0.4
stress
KB with Piperic 10 mM
+0.3
+0.4
-0.2
+0.6
+0.0
in planta
epiphytic; Lima bean
-0.2
+0.5
+0.8
+0.5
-0.5
stress
KB with Auraptene 10 mM
+0.3
-0.1
+0.0
+0.7
+0.3
stress
KB with Paclitaxel 10 mM
-0.1
+0.1
+0.1
+0.7
+0.5
stress
KB with Prenyletin 10 mM
+0.0
+0.2
-0.2
+0.9
+0.5
stress
KB with Harmol 10 mM
-0.0
-0.0
+0.2
+0.8
+0.5
in planta
Green bean; epiphytic
+0.5
+0.6
+0.2
+0.6
+0.1
in planta
epiphytic; Lima bean
+0.0
+0.6
+0.9
+0.3
+0.3
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