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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1862 and Psyr_1863 are separated by 155 nucleotides
Psyr_1863 and Psyr_1864 are separated by 200 nucleotides
Psyr_1864 and Psyr_1865 are separated by 263 nucleotides
Psyr_1865 and Psyr_1866 are separated by 190 nucleotides
Psyr_1862: Psyr_1862 - Zinc transporter ZIP, at 2,138,075 to 2,139,001
_1862
Psyr_1863: Psyr_1863 - conserved hypothetical protein, at 2,139,157 to 2,139,348
_1863
Psyr_1864: Psyr_1864 - spermidine synthase, at 2,139,549 to 2,140,409
_1864
Psyr_1865: Psyr_1865 - Sulfatase, at 2,140,673 to 2,142,760
_1865
Psyr_1866: Psyr_1866 - conserved hypothetical protein, at 2,142,951 to 2,143,187
_1866
Group
Condition
Psyr
_1862
Psyr
_1863
Psyr
_1864
Psyr
_1865
Psyr
_1866
stress
KB with Erythromycin 6.25 ug/ml
-0.5
N.D.
-1.2
-0.3
N.D.
stress
KB with Curcumin 10 mM
-0.9
N.D.
-0.7
-0.1
N.D.
stress
KB with Physcion 10 mM
-1.0
N.D.
-0.5
-0.1
N.D.
stress
KB with Biochanin a diacetate 10 mM
-0.4
N.D.
-0.9
-0.2
N.D.
stress
KB with Diallyl sulfide 10 mM
-1.2
N.D.
-0.2
-0.0
N.D.
in planta
apoplastic; Green bean; 6 days
-1.2
N.D.
-0.2
+0.0
N.D.
stress
KB with 4-hydroxychalcone 10 mM
-0.5
N.D.
-0.7
-0.2
N.D.
stress
KB with Totarol 10 mM
-0.6
N.D.
-0.5
-0.2
N.D.
stress
KB with Terpene 10 mM
-0.2
N.D.
-1.1
+0.0
N.D.
stress
KB with Paclitaxel 10 mM
-0.5
N.D.
-0.7
+0.0
N.D.
stress
KB with Lupeol 10 mM
-0.6
N.D.
-0.6
+0.0
N.D.
stress
KB with d-limonene 10 mM
-0.6
N.D.
-0.4
-0.2
N.D.
stress
KB with Benzalkonium chloride 1.55 ug/ml
-0.3
N.D.
-0.9
-0.0
N.D.
stress
KB with Lawsone 10 mM
-0.4
N.D.
-0.6
-0.2
N.D.
stress
KB with Avocatin A 10 mM
-0.3
N.D.
-0.8
+0.0
N.D.
stress
KB with Chrysophanol 10 mM
-0.1
N.D.
-1.0
-0.1
N.D.
stress
KB with Piperic 10 mM
-0.6
N.D.
-0.3
-0.2
N.D.
stress
KB with Veratrine 10 mM
-0.4
N.D.
-0.7
-0.0
N.D.
kb
KB
-0.2
N.D.
-0.9
+0.1
N.D.
in planta
Green bean; epiphytic
+0.2
N.D.
-1.2
+0.0
N.D.
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
+0.3
N.D.
-1.0
-0.1
N.D.
stress
KB with Prenyletin 10 mM
-0.2
N.D.
-0.7
+0.2
N.D.
stress
KB with Oxonitine 10 mM
+0.4
N.D.
-0.8
-0.2
N.D.
in planta
apoplastic, chopping recovery; Green bean
+0.2
N.D.
+0.3
-0.6
N.D.
stress
KB with Usnic Acid 10 mM
+0.7
N.D.
-0.4
-0.1
N.D.
in planta
apoplastic, chopping recovery; Green bean
+0.4
N.D.
+0.3
-0.5
N.D.
in planta
Green bean; epiphytic
+0.8
N.D.
-0.2
+0.1
N.D.
stress
KB with Acridine orange 3.125 ug/ml
+0.4
N.D.
+0.5
-0.2
N.D.
in planta
apoplastic, chopping recovery; Green bean
+0.7
N.D.
+0.4
-0.3
N.D.
stress
KB with Carbenicillin 3.1 ug/ml
+0.3
N.D.
+0.7
-0.1
N.D.
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