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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1570 and Psyr_1571 overlap by 4 nucleotides
Psyr_1571 and Psyr_1572 are separated by 86 nucleotides
Psyr_1572 and Psyr_1573 are separated by 66 nucleotides
Psyr_1573 and Psyr_1574 are separated by 76 nucleotides
Psyr_1570: Psyr_1570 - Copper resistance B precursor, at 1,764,819 to 1,765,727
_1570
Psyr_1571: Psyr_1571 - Twin-arginine translocation pathway signal:Copper-resistance protein CopA, at 1,765,724 to 1,767,502
_1571
Psyr_1572: Psyr_1572 - HNH endonuclease, at 1,767,589 to 1,767,963
_1572
Psyr_1573: Psyr_1573 - cyclic nucleotide-binding protein, at 1,768,030 to 1,768,506
_1573
Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643
_1574
Group
Condition
Psyr
_1570
Psyr
_1571
Psyr
_1572
Psyr
_1573
Psyr
_1574
stress
KB with Anethole 10 mM
-0.3
+0.0
-0.5
+0.1
+0.0
stress
KB with Harmol 10 mM
+0.0
+0.2
-0.1
-0.5
-0.2
stress
KB with Berberine 15.6 ug/ml
+0.2
+0.1
-0.2
-0.6
+0.0
stress
KB with Tetracycline 0.0015 ug/ml
-0.2
+0.3
-0.2
-0.4
+0.0
stress
KB with Oxedrine 10 mM
-0.3
+0.2
-0.3
-0.2
+0.2
in planta
apoplastic; Green bean; 6 days
+0.5
-0.0
-0.3
-0.4
-0.0
stress
KB with Veratrine 10 mM
+0.2
+0.1
+0.0
-0.6
+0.1
stress
KB with Trimethoprim 15.6 ug/ml
+0.1
+0.3
-0.4
-0.4
+0.2
stress
KB with Terpene 10 mM
+0.3
+0.1
-0.5
+0.0
-0.0
in planta
apoplastic, chopping recovery; Green bean
+0.5
+0.1
-0.2
-0.1
-0.4
stress
KB with 4-hydroxychalcone 10 mM
+0.4
+0.0
-0.4
-0.2
+0.1
in planta
apoplastic, chopping recovery; Green bean
+0.5
+0.1
-0.1
-0.2
-0.3
stress
KB with Mitomycin C 0.05 ug/ml
-0.6
+0.2
-0.3
+0.3
+0.4
stress
KB with L-alliin 10 mM
+0.2
+0.0
-0.4
+0.1
+0.2
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.3
+0.0
+0.4
-0.2
+0.1
stress
KB with Avocatin A 10 mM
-0.0
+0.2
-0.5
+0.2
+0.2
stress
KB with Piperic 10 mM
+0.5
+0.1
-0.3
-0.1
-0.0
stress
KB with Carbenicillin 3.1 ug/ml
-0.5
+0.6
-0.1
-0.1
+0.3
stress
KB with Helenine 10 mM
+0.3
+0.1
-0.3
+0.0
+0.1
in planta
apoplastic, chopping recovery; Green bean
+0.5
+0.1
+0.0
-0.2
-0.2
stress
KB with Piperacillin 0.775 ug/ml
+0.3
+0.2
-0.1
-0.3
+0.2
stress
KB with Palmatine 10 mM
-0.2
+0.1
-0.1
+0.6
-0.1
in planta
apoplastic; Green bean; 6 days
+0.6
+0.1
-0.2
+0.0
+0.1
stress
KB with Erythromycin 6.25 ug/ml
+0.3
+0.2
+0.1
-0.2
+0.2
stress
KB with Solanesol 10 mM
+0.3
+0.0
-0.1
+0.5
-0.0
stress
KB with Acridine orange 3.125 ug/ml
-0.5
+0.2
-0.4
+1.0
+0.3
stress
KB with Harmol Hydrochloride 10 mM
+0.4
+0.0
+0.0
+0.2
+0.2
stress
KB with Cantharidin 10 mM
+0.6
+0.1
-0.1
+0.4
+0.1
in planta
epiphytic; Lima bean
+0.5
-0.1
+0.2
+0.5
+0.1
stress
KB with Hydrastine (1R, 9S) 10 mM
+0.7
+0.2
-0.1
+0.3
+0.2
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