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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1521 and Psyr_1522 are separated by 815 nucleotides
Psyr_1522 and Psyr_1523 are separated by 1 nucleotides
Psyr_1523 and Psyr_1524 overlap by 4 nucleotides
Psyr_1524 and Psyr_1525 are separated by 471 nucleotides
Psyr_1521: Psyr_1521 - hypothetical protein, at 1,710,223 to 1,712,109
_1521
Psyr_1522: Psyr_1522 - Single-strand binding protein, at 1,712,925 to 1,713,389
_1522
Psyr_1523: Psyr_1523 - hypothetical protein, at 1,713,391 to 1,713,975
_1523
Psyr_1524: Psyr_1524 - conserved hypothetical protein, at 1,713,972 to 1,714,751
_1524
Psyr_1525: Psyr_1525 - conserved hypothetical protein, at 1,715,223 to 1,716,596
_1525
Group
Condition
Psyr
_1521
Psyr
_1522
Psyr
_1523
Psyr
_1524
Psyr
_1525
in planta
apoplastic, chopping recovery; Green bean
-0.2
-0.5
-0.2
+0.2
-0.1
in planta
apoplastic, chopping recovery; Green bean
-0.1
-0.5
-0.3
+0.3
-0.0
stress
KB with Nalidixic 0.775 ug/ml
-0.2
-0.1
+0.1
-0.2
-0.2
stress
KB with Conessine 10 mM
+0.1
-0.5
+0.1
-0.1
-0.1
in planta
epiphytic; Lima bean
-0.5
-0.0
+0.2
+0.0
-0.1
stress
KB with Escin 10 mM
-0.4
-0.2
+0.2
-0.0
+0.0
in planta
apoplastic, chopping recovery; Green bean
-0.1
-0.3
-0.2
+0.3
-0.0
kb
KB
-0.2
-0.1
+0.2
-0.1
-0.2
stress
KB with Phloretin 125 ug/ml
-0.2
-0.3
+0.1
+0.1
-0.1
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.2
-0.3
+0.2
-0.0
-0.0
stress
KB with Piperine 10 mM
-0.2
-0.3
+0.2
-0.0
+0.1
stress
KB with Mitomycin C 0.05 ug/ml
-0.1
+0.0
+0.2
+0.1
-0.4
in planta
apoplastic, chopping recovery; Green bean
-0.1
-0.4
+0.0
+0.3
-0.0
stress
KB with Trimethoprim 15.6 ug/ml
-0.1
-0.3
+0.1
+0.2
-0.0
stress
KB with Acriflavine 1.25 ug/ml
-0.3
+0.1
+0.1
+0.1
-0.2
stress
KB with Quercetin 360 ug/ml
-0.2
-0.1
+0.2
+0.1
-0.2
stress
KB with Harmol 10 mM
-0.1
-0.3
+0.2
-0.1
+0.1
stress
KB with Avocadene 10 mM
-0.1
-0.3
+0.3
+0.1
-0.0
stress
KB with Oxonitine 10 mM
-0.3
-0.2
+0.3
+0.1
+0.1
in planta
Green bean; epiphytic
-0.2
+0.4
-0.0
-0.2
-0.0
in planta
Green bean; epiphytic
-0.1
+0.5
-0.3
-0.0
-0.1
stress
KB with Gossypol-Acetic Acid Complex 10 mM
-0.1
-0.3
+0.1
+0.2
+0.1
stress
KB with Cantharidin 10 mM
-0.2
-0.1
+0.3
+0.1
-0.1
stress
KB with Tetracycline 0.0015 ug/ml
-0.3
+0.2
+0.1
+0.1
+0.1
stress
KB with Flavone 0.125 mg/ml
-0.1
+0.2
+0.2
-0.1
-0.1
stress
KB with Solanesol 10 mM
-0.1
-0.1
+0.3
-0.0
+0.2
stress
KB with Benzalkonium chloride 1.55 ug/ml
-0.2
+0.1
+0.3
+0.2
-0.0
in planta
apoplastic; Green bean; 6 days
+0.0
+0.4
-0.2
-0.0
+0.1
stress
KB with Oxedrine 10 mM
-0.2
+0.3
+0.3
+0.0
+0.1
stress
KB with Palmatine 10 mM
+0.1
-0.0
+0.3
-0.1
+0.3
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