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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1425 and Psyr_1426 are separated by 655 nucleotides
Psyr_1426 and Psyr_1427 overlap by 4 nucleotides
Psyr_1427 and Psyr_1428 are separated by 2 nucleotides
Psyr_1428 and Psyr_1429 are separated by 20 nucleotides
Psyr_1425: Psyr_1425 - DNA-directed DNA polymerase, at 1,612,927 to 1,614,207
_1425
Psyr_1426: Psyr_1426 - conserved hypothetical protein, at 1,614,863 to 1,616,401
_1426
Psyr_1427: Psyr_1427 - conserved hypothetical protein, at 1,616,398 to 1,616,772
_1427
Psyr_1428: Psyr_1428 - conserved hypothetical protein, at 1,616,775 to 1,618,142
_1428
Psyr_1429: Psyr_1429 - Protein of unknown function DUF1527, at 1,618,163 to 1,619,101
_1429
Group
Condition
Psyr
_1425
Psyr
_1426
Psyr
_1427
Psyr
_1428
Psyr
_1429
stress
KB with Paclitaxel 10 mM
-0.2
-0.0
-0.3
-0.4
-0.2
kb
KB
-0.2
-0.1
-0.1
-0.2
-0.2
stress
KB with Piperacillin 0.775 ug/ml
+0.0
-0.3
-0.2
-0.2
-0.1
stress
KB with Harmol 10 mM
+0.0
-0.1
+0.0
-0.4
-0.2
stress
KB with Escin 10 mM
-0.2
-0.3
-0.0
-0.2
+0.1
stress
KB with Piperine 10 mM
-0.1
+0.2
-0.2
-0.3
-0.1
stress
KB with Oxedrine 10 mM
+0.0
-0.1
-0.3
-0.2
+0.0
stress
KB with Isosafrole 10 mM
-0.1
-0.1
-0.2
-0.3
+0.1
in planta
apoplastic, chopping recovery; Green bean
+0.0
-0.0
-0.6
+0.1
-0.0
stress
KB with Erythromycin 6.25 ug/ml
+0.2
-0.1
-0.3
-0.1
-0.2
stress
KB with Usnic Acid 10 mM
-0.0
-0.2
-0.1
-0.3
+0.1
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
+0.1
-0.1
-0.2
-0.3
+0.1
stress
KB with Harmine 10 mM
+0.1
-0.2
-0.1
-0.3
+0.0
stress
KB with Strychnine Sulfate 10 mM
-0.1
-0.1
-0.2
-0.2
+0.2
stress
KB with Carbenicillin 3.1 ug/ml
-0.0
-0.0
+0.2
-0.3
-0.2
in planta
apoplastic, chopping recovery; Green bean
-0.2
+0.1
-0.5
+0.4
-0.0
in planta
apoplastic, chopping recovery; Green bean
-0.1
+0.1
-0.4
+0.2
+0.0
in planta
Green bean; epiphytic
-0.1
-0.2
+0.3
-0.4
+0.1
in planta
apoplastic, chopping recovery; Green bean
-0.1
+0.1
-0.4
+0.3
-0.0
stress
KB with Conessine 10 mM
-0.0
+0.0
+0.1
-0.5
+0.2
stress
KB with Avocadene 10 mM
-0.1
-0.1
+0.1
-0.3
+0.3
stress
KB with Dimethyl Sulfoxide 1.25 vol%
+0.2
-0.0
+0.2
-0.3
+0.0
stress
KB with capsaicin 0.25 mg/ml
+0.1
+0.1
-0.2
-0.1
+0.1
stress
KB with Trimethoprim 15.6 ug/ml
+0.0
-0.2
+0.2
-0.2
+0.2
stress
KB with Avocadyne 10 mM
+0.0
+0.0
+0.2
-0.3
+0.1
stress
KB with Mitomycin C 0.05 ug/ml
+0.2
+0.2
-0.4
+0.0
+0.1
stress
KB with Acridine orange 3.125 ug/ml
+0.3
+0.4
-0.0
-0.7
+0.4
in planta
Green bean; epiphytic
+0.1
+0.0
+0.3
-0.1
+0.2
in planta
apoplastic; Green bean; 6 days
-0.0
-0.2
+0.4
+0.2
+0.2
in planta
apoplastic; Green bean; 6 days
-0.0
-0.2
+0.3
+0.2
+0.2
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