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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_RNA24 and Psyr_1420 are separated by 647 nucleotides
Psyr_1420 and Psyr_1421 are separated by 125 nucleotides
Psyr_1421 and Psyr_1422 overlap by 4 nucleotides
Psyr_1422 and Psyr_1423 are separated by 428 nucleotides
Psyr_RNA24: Psyr_RNA24 - tRNA-Pro, at 1,604,490 to 1,604,566
_RNA24
Psyr_1420: Psyr_1420 - conserved hypothetical protein, at 1,605,214 to 1,607,838
_1420
Psyr_1421: Psyr_1421 - Phage integrase, at 1,607,964 to 1,609,370
_1421
Psyr_1422: Psyr_1422 - Protein of unknown function DUF1528:Relaxase, at 1,609,367 to 1,611,271
_1422
Psyr_1423: Psyr_1423 - Protein of unknown function DUF159, at 1,611,700 to 1,612,392
_1423
Group
Condition
Psyr
_RNA24
Psyr
_1420
Psyr
_1421
Psyr
_1422
Psyr
_1423
stress
KB with Paclitaxel 10 mM
N.D.
-0.1
-0.3
-0.5
-0.2
stress
KB with Harmol 10 mM
N.D.
-0.1
-0.0
-0.6
-0.2
stress
KB with Harmine 10 mM
N.D.
-0.2
-0.1
-0.6
+0.1
stress
KB with Erythromycin 6.25 ug/ml
N.D.
-0.0
-0.2
-0.5
-0.1
stress
KB with Palmatine chloride 10 mM
N.D.
-0.1
-0.2
-0.7
+0.1
stress
KB with Carbenicillin 3.1 ug/ml
N.D.
-0.0
-0.4
-0.3
+0.1
stress
KB with Helenine 10 mM
N.D.
+0.0
-0.1
-0.6
+0.1
stress
KB with Physcion 10 mM
N.D.
-0.0
+0.0
-0.7
+0.1
stress
KB with L-alliin 10 mM
N.D.
-0.0
-0.1
-0.5
+0.1
stress
KB with Totarol 10 mM
N.D.
-0.0
+0.1
-0.6
+0.1
stress
KB with Conessine 10 mM
N.D.
-0.0
+0.2
-0.6
-0.0
kb
KB
N.D.
-0.0
+0.1
-0.6
+0.1
stress
KB with Oxedrine 10 mM
N.D.
-0.2
+0.2
-0.3
-0.2
stress
KB with Anethole 10 mM
N.D.
+0.0
-0.0
-0.6
+0.1
stress
KB with Gossypetin 10 mM
N.D.
+0.0
+0.3
-0.6
-0.0
stress
KB with Palmatine 10 mM
N.D.
-0.0
+0.2
-0.6
+0.0
stress
KB with Oxonitine 10 mM
N.D.
+0.1
-0.1
-0.4
+0.2
stress
KB with Mitomycin C 0.05 ug/ml
N.D.
-0.1
-0.4
+0.5
-0.2
stress
KB with Lupeol 10 mM
N.D.
+0.0
+0.2
-0.5
+0.2
in planta
apoplastic; Green bean; 6 days
N.D.
-0.0
+0.3
-0.5
+0.1
stress
KB with 4-hydroxychalcone 10 mM
N.D.
+0.0
+0.3
-0.4
-0.0
stress
KB with Anabasine Hydrochloride 10 mM
N.D.
-0.0
+0.2
-0.5
+0.2
stress
KB with 4-acetoxyphenol 10 mM
N.D.
+0.0
+0.1
-0.6
+0.3
stress
KB with Terpene 10 mM
N.D.
-0.1
+0.1
-0.4
+0.3
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
N.D.
+0.1
-0.2
-0.3
+0.3
stress
KB with Nonanoic 10 mM
N.D.
+0.1
+0.3
-0.5
+0.2
stress
KB with Curcumin 10 mM
N.D.
+0.1
+0.4
-0.5
+0.1
stress
KB with Diallyl sulfide 10 mM
N.D.
+0.1
+0.2
-0.5
+0.4
in planta
apoplastic, chopping recovery; Green bean
N.D.
-0.1
+0.4
-0.2
+0.0
in planta
epiphytic; Lima bean
N.D.
+0.1
+0.4
-0.4
+0.1
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