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Cofit
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_1085 and Psyr_1086 are separated by 156 nucleotides
Psyr_1086 and Psyr_1087 are separated by 123 nucleotides
Psyr_1087 and Psyr_1088 overlap by 4 nucleotides
Psyr_1088 and Psyr_1089 are separated by 43 nucleotides
Psyr_1085: Psyr_1085 - 23S rRNA m(6)A-1618 methyltransferase, at 1,226,571 to 1,227,557
_1085
Psyr_1086: Psyr_1086 - valyl-tRNA synthetase, at 1,227,714 to 1,230,560
_1086
Psyr_1087: Psyr_1087 - CDS, at 1,230,684 to 1,230,956
_1087
Psyr_1088: Psyr_1088 - CDS, at 1,230,953 to 1,231,684
_1088
Psyr_1089: Psyr_1089 - conserved hypothetical protein, at 1,231,728 to 1,232,162
_1089
Group
Condition
Psyr
_1085
Psyr
_1086
Psyr
_1087
Psyr
_1088
Psyr
_1089
stress
KB with d-limonene 10 mM
-0.5
N.D.
-0.5
-0.2
N.D.
stress
KB with Avocatin A 10 mM
-0.5
N.D.
-0.4
-0.3
N.D.
stress
KB with 4-acetoxyphenol 10 mM
-0.6
N.D.
-0.3
-0.1
N.D.
stress
KB with Chaulmoogric 10 mM
-0.5
N.D.
-0.1
-0.3
N.D.
stress
KB with Avocadyne 10 mM
-0.0
N.D.
-0.7
-0.2
N.D.
stress
KB with Gossypetin 10 mM
-0.5
N.D.
-0.2
-0.2
N.D.
stress
KB with Palmatine 10 mM
-0.1
N.D.
-0.6
-0.1
N.D.
in planta
epiphytic; Lima bean
-0.6
N.D.
+0.2
-0.3
N.D.
stress
KB with Harmol 10 mM
-0.4
N.D.
-0.3
-0.1
N.D.
kb
KB
-0.5
N.D.
-0.2
+0.1
N.D.
kb
KB
+0.1
N.D.
-0.5
-0.1
N.D.
stress
KB with Nonanoic 10 mM
-0.5
N.D.
+0.1
-0.0
N.D.
stress
KB with Levodopa 10 mM
-0.6
N.D.
+0.3
-0.1
N.D.
stress
KB with Auraptene 10 mM
-0.3
N.D.
+0.2
-0.3
N.D.
stress
KB with Gossypol-Acetic Acid Complex 10 mM
+0.2
N.D.
-0.2
-0.3
N.D.
stress
KB with Avocadene 10 mM
+0.3
N.D.
-0.3
-0.2
N.D.
in planta
apoplastic, chopping recovery; Green bean
-0.1
N.D.
-0.4
+0.3
N.D.
kb
KB
-0.4
N.D.
+0.3
-0.1
N.D.
in planta
apoplastic, chopping recovery; Green bean
-0.1
N.D.
-0.3
+0.3
N.D.
stress
KB with Escin 10 mM
+0.3
N.D.
-0.1
-0.2
N.D.
stress
KB with Rifampicin 0.1 mg/ml
-0.4
N.D.
+0.3
+0.1
N.D.
in planta
apoplastic, chopping recovery; Green bean
-0.1
N.D.
-0.2
+0.4
N.D.
stress
KB with Acridine orange 3.125 ug/ml
+0.2
N.D.
+0.3
-0.4
N.D.
in planta
apoplastic, chopping recovery; Green bean
+0.1
N.D.
-0.2
+0.4
N.D.
stress
KB with Sinomenine 10 mM
+0.6
N.D.
-0.2
-0.1
N.D.
stress
KB with Carbenicillin 3.1 ug/ml
+0.4
N.D.
+0.1
-0.2
N.D.
stress
KB with Novobiocin 7.75 ug/ml
+0.2
N.D.
+0.4
-0.2
N.D.
in planta
epiphytic; Lima bean
+0.2
N.D.
+0.5
-0.3
N.D.
stress
KB with Harmine 10 mM
+0.2
N.D.
+0.5
-0.1
N.D.
stress
KB with Benzalkonium chloride 1.55 ug/ml
+0.4
N.D.
+0.6
-0.2
N.D.
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