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Cofit
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0738 and Psyr_0739 are separated by 331 nucleotides
Psyr_0739 and Psyr_0740 are separated by 273 nucleotides
Psyr_0740 and Psyr_0741 are separated by 80 nucleotides
Psyr_0741 and Psyr_0742 are separated by 52 nucleotides
Psyr_0738: Psyr_0738 - type III effector protein AvrRpm1, at 842,575 to 843,261
_0738
Psyr_0739: Psyr_0739 - CDS, at 843,593 to 844,246
_0739
Psyr_0740: Psyr_0740 - CDS, at 844,520 to 844,927
_0740
Psyr_0741: Psyr_0741 - transcriptional regulator, TetR family, at 845,008 to 845,643
_0741
Psyr_0742: Psyr_0742 - Enoyl-CoA hydratase/isomerase, at 845,696 to 846,529
_0742
Group
Condition
Psyr
_0738
Psyr
_0739
Psyr
_0740
Psyr
_0741
Psyr
_0742
stress
KB with Tetracycline 0.0015 ug/ml
-0.1
-0.2
-0.3
-0.3
-0.5
stress
KB with Carbenicillin 3.1 ug/ml
-0.4
-0.2
-0.3
-0.5
-0.0
stress
KB with Levodopa 10 mM
-0.3
-0.6
-0.0
-0.3
+0.0
stress
KB with Erythromycin 6.25 ug/ml
-0.4
+0.2
-0.2
-0.3
-0.5
stress
KB with Ampicillin 0.775 ug/ml
-0.2
-0.1
-0.2
-0.2
-0.4
stress
KB with Mitomycin C 0.05 ug/ml
-0.2
-0.4
-0.0
-0.1
-0.4
in planta
apoplastic, chopping recovery; Green bean
-0.0
-0.5
-0.0
+0.2
-0.8
stress
KB with Terpene 10 mM
-0.2
-0.6
+0.1
-0.1
-0.2
stress
KB with Nalidixic 0.775 ug/ml
-0.1
-0.1
+0.0
-0.2
-0.6
in planta
apoplastic, chopping recovery; Green bean
-0.1
-0.3
-0.2
+0.4
-0.8
stress
KB with Hydrastine (1R, 9S) 10 mM
-0.2
-0.2
-0.2
-0.3
+0.0
stress
KB with Gossypetin 10 mM
-0.2
-0.3
+0.1
-0.5
+0.1
in planta
apoplastic, chopping recovery; Green bean
-0.1
-0.6
-0.0
+0.2
-0.5
in planta
apoplastic, chopping recovery; Green bean
+0.1
-0.5
-0.1
+0.0
-0.4
in planta
epiphytic; Lima bean
-0.4
-0.3
-0.2
+0.1
-0.0
kb
KB
+0.1
-0.3
+0.1
-0.2
-0.4
stress
KB with Trimethoprim 15.6 ug/ml
-0.2
+0.2
-0.1
-0.1
-0.6
stress
KB with Avocadyne 10 mM
-0.3
-0.4
-0.0
-0.2
+0.2
stress
KB with Curcumin 10 mM
-0.2
-0.1
-0.0
-0.5
+0.1
stress
KB with 4-acetoxyphenol 10 mM
-0.3
+0.2
+0.1
-0.3
-0.3
stress
KB with Acridine orange 3.125 ug/ml
+0.2
-0.4
-0.1
-0.1
-0.2
stress
KB with Diallyl sulfide 10 mM
-0.0
-0.5
+0.1
-0.3
+0.3
in planta
Green bean; epiphytic
-0.5
+0.4
-0.1
-0.3
-0.1
stress
KB with Paclitaxel 10 mM
+0.1
-0.3
-0.0
-0.4
+0.2
stress
KB with Biochanin a diacetate 10 mM
-0.1
-0.2
+0.1
-0.4
+0.3
stress
KB with Chaulmoogric 10 mM
-0.3
-0.1
+0.2
-0.3
+0.4
stress
KB with Auraptene 10 mM
+0.1
-0.2
+0.0
-0.3
+0.4
stress
KB with Physcion 10 mM
-0.2
-0.3
+0.2
-0.1
+0.5
in planta
apoplastic; Green bean; 6 days
+0.1
+0.3
+0.3
-0.1
+0.3
in planta
apoplastic; Green bean; 6 days
+0.1
+0.2
+0.2
+0.1
+0.4
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