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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0568 and Psyr_0569 are separated by 14 nucleotides
Psyr_0569 and Psyr_0570 overlap by 1 nucleotides
Psyr_0570 and Psyr_0571 are separated by 0 nucleotides
Psyr_0571 and Psyr_0572 are separated by 93 nucleotides
Psyr_0568: Psyr_0568 - Protein of unknown function UPF0079, at 645,746 to 646,177
_0568
Psyr_0569: Psyr_0569 - N-acetylmuramoyl-L-alanine amidase, at 646,192 to 647,607
_0569
Psyr_0570: Psyr_0570 - DNA mismatch repair protein MutL, at 647,607 to 649,553
_0570
Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525
_0571
Psyr_0572: Psyr_0572 - RNA-binding protein Hfq, at 650,619 to 650,879
_0572
Group
Condition
Psyr
_0568
Psyr
_0569
Psyr
_0570
Psyr
_0571
Psyr
_0572
stress
KB with Avocadyne 10 mM
N.D.
+0.1
-0.3
-1.9
N.D.
stress
KB with Prenyletin 10 mM
N.D.
-0.5
-0.1
-1.3
N.D.
stress
KB with Escin 10 mM
N.D.
-0.5
-0.2
-1.0
N.D.
stress
KB with Veratrine 10 mM
N.D.
-0.1
-0.3
-1.3
N.D.
stress
KB with Trimethoprim 15.6 ug/ml
N.D.
-0.2
-0.1
-1.3
N.D.
stress
KB with Chaulmoogric 10 mM
N.D.
-0.4
-0.2
-1.1
N.D.
stress
KB with Auraptene 10 mM
N.D.
-0.4
-0.1
-1.1
N.D.
in planta
apoplastic, chopping recovery; Green bean
N.D.
-0.6
-0.2
-0.7
N.D.
stress
KB with Methanol 5 vol%
N.D.
-0.3
-0.3
-0.9
N.D.
stress
KB with Terpene 10 mM
N.D.
-0.4
-0.4
-0.7
N.D.
stress
KB with Ampicillin 0.775 ug/ml
N.D.
-0.2
-0.2
-1.1
N.D.
stress
KB with Nitrofurantoin 0.0625 mg/ml
N.D.
+0.1
-0.2
-1.3
N.D.
stress
KB with Piperic 10 mM
N.D.
+0.0
-0.3
-1.1
N.D.
stress
KB with Physcion 10 mM
N.D.
-0.1
-0.3
-0.9
N.D.
kb
KB
N.D.
-0.1
-0.3
-1.0
N.D.
stress
KB with Avocatin A 10 mM
N.D.
+0.1
-0.3
-1.0
N.D.
stress
KB with Piperine 10 mM
N.D.
+0.3
-0.2
-1.3
N.D.
stress
KB with Rotenone 0.125 mg/ml
N.D.
+0.1
-0.3
-1.0
N.D.
stress
KB with Hydrastine (1R, 9S) 10 mM
N.D.
+0.1
-0.1
-1.1
N.D.
stress
KB with 4-acetoxyphenol 10 mM
N.D.
+0.1
-0.2
-1.0
N.D.
kb
KB
N.D.
+0.1
-0.2
-0.9
N.D.
stress
KB with Gossypetin 10 mM
N.D.
+0.1
-0.2
-1.0
N.D.
stress
KB with Paclitaxel 10 mM
N.D.
+0.2
-0.3
-0.8
N.D.
stress
KB with Nonanoic 10 mM
N.D.
+0.2
-0.3
-0.8
N.D.
stress
KB with Curcumin 10 mM
N.D.
+0.2
+0.1
-1.1
N.D.
stress
KB with Nalidixic 0.775 ug/ml
N.D.
+0.6
+0.0
+0.7
N.D.
stress
KB with Acriflavine 1.25 ug/ml
N.D.
-0.1
+0.2
+1.5
N.D.
stress
KB with Berberine 15.6 ug/ml
N.D.
+0.5
+0.3
+1.1
N.D.
stress
KB with Carbenicillin 3.1 ug/ml
N.D.
+0.6
+0.2
+1.6
N.D.
stress
KB with Novobiocin 7.75 ug/ml
N.D.
+1.2
+0.8
+1.5
N.D.
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