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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0500 and Psyr_0501 are separated by 58 nucleotides
Psyr_0501 and Psyr_0502 are separated by 23 nucleotides
Psyr_0502 and Psyr_0503 are separated by 195 nucleotides
Psyr_0503 and Psyr_0504 are separated by 99 nucleotides
Psyr_0500: Psyr_0500 - biotin carboxyl carrier protein / biotin carboxylase, at 542,495 to 544,228
_0500
Psyr_0501: Psyr_0501 - MscS Mechanosensitive ion channel, at 544,287 to 547,691
_0501
Psyr_0502: Psyr_0502 - potassium/proton antiporter, CPA1 family, at 547,715 to 549,511
_0502
Psyr_0503: Psyr_0503 - conserved domain protein, at 549,707 to 552,841
_0503
Psyr_0504: Psyr_0504 - conserved domain protein, at 552,941 to 555,589
_0504
Group
Condition
Psyr
_0500
Psyr
_0501
Psyr
_0502
Psyr
_0503
Psyr
_0504
stress
KB with Avocadyne 10 mM
+0.1
-0.8
-0.2
-0.1
-0.0
stress
KB with Novobiocin 7.75 ug/ml
-0.1
-0.1
-0.8
+0.0
+0.1
stress
KB with Rifampicin 0.1 mg/ml
-0.2
-0.0
-0.5
-0.0
-0.2
stress
KB with Piperic 10 mM
+0.1
-0.8
-0.1
+0.1
-0.0
stress
KB with Methanol 5 vol%
-0.3
+0.1
-0.4
-0.0
-0.1
stress
KB with Acridine orange 3.125 ug/ml
-0.6
-0.1
+0.4
-0.0
-0.2
stress
KB with Palmatine 10 mM
+0.2
-0.7
+0.2
-0.0
-0.1
in planta
epiphytic; Lima bean
-0.2
+0.3
-0.3
+0.0
+0.1
stress
KB with Acriflavine 1.25 ug/ml
+0.0
-0.3
+0.3
-0.1
-0.0
stress
KB with Erythromycin 6.25 ug/ml
-0.0
-0.1
+0.4
-0.1
-0.1
stress
KB with Rotenone 0.125 mg/ml
+0.1
-0.2
+0.3
-0.1
-0.1
in planta
apoplastic; Green bean; 6 days
-0.1
+0.2
-0.1
+0.2
-0.1
stress
KB with Dimethyl Sulfoxide 1.25 vol%
-0.1
-0.1
+0.4
-0.0
-0.2
stress
KB with Conessine 10 mM
+0.1
-0.1
+0.3
-0.0
-0.1
stress
KB with Phloretin 125 ug/ml
-0.0
-0.2
+0.5
-0.0
-0.0
in planta
Green bean; epiphytic
+0.4
-0.1
-0.3
+0.0
+0.1
stress
KB with Carbenicillin 3.1 ug/ml
+0.2
+0.1
+0.2
-0.2
+0.0
stress
KB with Harmine 10 mM
+0.0
-0.1
+0.6
-0.1
-0.1
stress
KB with Auraptene 10 mM
+0.0
+0.2
+0.3
-0.0
-0.1
stress
KB with Piperacillin 0.775 ug/ml
+0.3
+0.0
+0.2
-0.1
-0.1
stress
KB with Sinomenine 10 mM
+0.1
+0.1
+0.3
-0.1
-0.1
in planta
Green bean; epiphytic
+0.3
+0.1
-0.1
+0.1
+0.0
in planta
apoplastic, chopping recovery; Green bean
+0.0
+0.4
+0.2
-0.1
-0.2
stress
KB with Sclareolide 10 mM
+0.2
-0.1
+0.3
+0.0
-0.1
stress
KB with Tetracycline 0.0015 ug/ml
-0.0
+0.1
+0.4
-0.1
+0.2
stress
KB with Harmol Hydrochloride 10 mM
-0.1
+0.0
+0.9
-0.2
-0.1
stress
KB with Harmol 10 mM
-0.3
-0.2
+1.4
-0.0
-0.3
in planta
apoplastic; Green bean; 6 days
-0.1
+0.3
+0.3
+0.2
-0.1
stress
KB with Mitomycin C 0.05 ug/ml
-0.2
+0.0
+1.4
-0.2
-0.3
stress
KB with Trimethoprim 15.6 ug/ml
+0.4
+0.1
+0.2
-0.0
+0.0
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