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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0122 and Psyr_0123 are separated by 324 nucleotides
Psyr_0123 and Psyr_0124 are separated by 239 nucleotides
Psyr_0124 and Psyr_0125 are separated by 270 nucleotides
Psyr_0125 and Psyr_0126 are separated by 16 nucleotides
Psyr_0122: Psyr_0122 - NAD(P)H dehydrogenase (quinone), at 131,737 to 132,393
_0122
Psyr_0123: Psyr_0123 - Short-chain dehydrogenase/reductase SDR, at 132,718 to 133,539
_0123
Psyr_0124: Psyr_0124 - Hemolysin-type calcium-binding region, at 133,779 to 135,326
_0124
Psyr_0125: Psyr_0125 - conserved hypothetical protein, at 135,597 to 135,953
_0125
Psyr_0126: Psyr_0126 - Protein of unknown function DUF805, at 135,970 to 136,410
_0126
Group
Condition
Psyr
_0122
Psyr
_0123
Psyr
_0124
Psyr
_0125
Psyr
_0126
stress
KB with Sclareolide 10 mM
-0.0
-0.1
+0.0
-1.1
+0.1
stress
KB with Terpene 10 mM
-0.1
-0.1
-0.0
-0.6
-0.2
stress
KB with Emodin 10 mM
-0.2
-0.0
+0.0
-0.6
-0.0
stress
KB with Veratrine 10 mM
-0.2
-0.1
-0.0
-0.7
+0.2
stress
KB with Palmatine chloride 10 mM
-0.1
-0.1
-0.1
-0.4
-0.1
stress
KB with Paclitaxel 10 mM
-0.1
-0.1
-0.0
-0.3
-0.3
in planta
epiphytic; Lima bean
-0.1
-0.2
+0.0
-0.4
-0.1
stress
KB with 4-acetoxyphenol 10 mM
-0.1
-0.0
-0.1
-0.5
+0.0
stress
KB with Anethole 10 mM
-0.2
-0.0
-0.0
-0.4
+0.1
stress
KB with Chrysophanol 10 mM
-0.1
-0.0
+0.0
-0.6
+0.2
stress
KB with Curcumin 10 mM
-0.0
-0.0
-0.1
-0.7
+0.4
stress
KB with Ampicillin 0.775 ug/ml
-0.0
-0.2
+0.0
+0.2
-0.3
kb
KB
+0.0
-0.1
-0.0
+0.4
-0.4
stress
KB with Rotenone 0.125 mg/ml
-0.1
-0.2
-0.1
+0.4
-0.1
stress
KB with Harmol 10 mM
-0.1
-0.0
+0.2
-0.2
+0.2
stress
KB with Flavone 0.125 mg/ml
-0.1
-0.1
-0.0
+0.2
+0.3
in planta
apoplastic; Green bean; 6 days
+0.1
+0.1
+0.1
-0.2
+0.2
stress
KB with Chloramphenicol 1.55 ug/ml
+0.0
-0.1
-0.1
+0.6
-0.0
stress
KB with Novobiocin 7.75 ug/ml
-0.0
-0.2
+0.0
+0.4
+0.2
stress
KB with capsaicin 0.25 mg/ml
-0.1
-0.0
-0.1
+0.8
-0.2
stress
KB with Acriflavine 1.25 ug/ml
-0.0
-0.1
+0.1
+0.4
+0.1
stress
KB with Harmine 10 mM
-0.2
-0.2
+0.0
+0.7
+0.1
stress
KB with Isosafrole 10 mM
+0.1
-0.1
-0.0
+0.3
+0.2
stress
KB with Berberine 15.6 ug/ml
+0.0
-0.1
-0.0
+0.5
+0.1
stress
KB with Oxonitine 10 mM
+0.0
-0.1
+0.1
+0.3
+0.3
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
+0.0
-0.1
+0.0
+0.5
+0.2
stress
KB with Cotarnine Chloride 10 mM
+0.0
-0.1
+0.1
+0.6
+0.3
in planta
epiphytic; Lima bean
-0.1
+0.0
+0.1
+0.5
+0.4
stress
KB with Mitomycin C 0.05 ug/ml
-0.2
-0.3
+0.1
+0.9
+0.4
stress
KB with Carbenicillin 3.1 ug/ml
-0.1
-0.1
+0.2
+0.9
+0.2
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