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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0081 and Psyr_0082 are separated by 2 nucleotides
Psyr_0082 and Psyr_0083 are separated by 13 nucleotides
Psyr_0083 and Psyr_0084 are separated by 94 nucleotides
Psyr_0084 and Psyr_0085 are separated by 151 nucleotides
Psyr_0081: Psyr_0081 - ABC transporter, at 87,481 to 88,461
_0081
Psyr_0082: Psyr_0082 - Binding-protein-dependent transport systems inner membrane component, at 88,464 to 89,336
_0082
Psyr_0083: Psyr_0083 - Binding-protein-dependent transport systems inner membrane component, at 89,350 to 90,171
_0083
Psyr_0084: Psyr_0084 - extracellular solute-binding protein, family 1, at 90,266 to 91,276
_0084
Psyr_0085: Psyr_0085 - conserved hypothetical protein, at 91,428 to 91,607
_0085
Group
Condition
Psyr
_0081
Psyr
_0082
Psyr
_0083
Psyr
_0084
Psyr
_0085
in planta
epiphytic; Lima bean
-1.7
-0.6
-0.2
-0.6
+0.3
in planta
epiphytic; Lima bean
-2.1
-0.2
-0.2
-0.4
+0.4
stress
KB with Auraptene 10 mM
+0.0
+0.2
+0.1
-0.1
-1.0
stress
KB with 4-hydroxychalcone 10 mM
+0.2
+0.1
+0.0
-0.3
-0.9
stress
KB with Mitomycin C 0.05 ug/ml
-0.3
+0.1
+0.2
-0.2
-0.6
stress
KB with Conessine 10 mM
+0.2
+0.1
+0.1
-0.2
-0.7
kb
KB
+0.5
+0.1
+0.1
+0.0
-1.0
stress
KB with Isosafrole 10 mM
-0.6
+0.2
-0.1
-0.2
+0.3
stress
KB with Sinomenine 10 mM
-0.5
+0.2
-0.1
-0.3
+0.3
stress
KB with Anethole 10 mM
+0.3
+0.2
-0.1
-0.1
-0.5
in planta
Green bean; epiphytic
+0.6
-0.3
-0.1
+0.1
-0.4
stress
KB with Methanol 5 vol%
-0.6
+0.2
-0.2
+0.2
+0.4
stress
KB with Piperine 10 mM
+0.6
+0.2
-0.1
-0.1
-0.6
stress
KB with Acridine orange 3.125 ug/ml
-0.0
+0.4
+0.4
-0.1
-0.6
stress
KB with Chaulmoogric 10 mM
+0.7
+0.3
+0.0
+0.0
-0.8
stress
KB with d-limonene 10 mM
+0.5
+0.0
+0.3
-0.1
-0.5
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
-0.5
+0.3
-0.2
+0.0
+0.6
stress
KB with Helenine 10 mM
+0.8
+0.1
-0.1
-0.1
-0.3
stress
KB with Totarol 10 mM
+0.8
-0.1
+0.0
-0.1
-0.4
stress
KB with Palmatine 10 mM
+1.1
+0.2
-0.1
-0.2
-0.5
stress
KB with Palmatine chloride 10 mM
+0.7
+0.1
+0.2
-0.0
-0.3
stress
KB with Gossypetin 10 mM
+0.6
+0.2
+0.1
+0.1
-0.4
stress
KB with Emodin 10 mM
+0.6
+0.4
+0.0
-0.0
-0.4
stress
KB with Lupeol 10 mM
+0.6
+0.6
+0.0
-0.2
-0.3
stress
KB with Methyl-2-Hydroxy-Phenylproprionate 10 mM
+0.1
+0.2
-0.2
-0.2
+0.8
stress
KB with Levodopa 10 mM
+0.8
+0.4
+0.0
-0.1
-0.3
stress
KB with Harmol 10 mM
+0.3
+0.5
+0.4
-0.2
-0.1
in planta
Green bean; epiphytic
+0.9
-0.1
-0.0
-0.1
+0.2
stress
KB with 4-acetoxyphenol 10 mM
+0.9
+0.2
+0.0
+0.1
+0.1
stress
KB with Carbenicillin 3.1 ug/ml
+0.7
+0.4
+0.5
+0.1
+0.4
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