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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a ΔmexB
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_0054 and Psyr_0055 are separated by 216 nucleotides
Psyr_0055 and Psyr_0056 are separated by 77 nucleotides
Psyr_0056 and Psyr_0057 overlap by 10 nucleotides
Psyr_0057 and Psyr_0058 are separated by 4 nucleotides
Psyr_0054: Psyr_0054 - alginate regulatory protein AlgR3, at 54,905 to 55,921
_0054
Psyr_0055: Psyr_0055 - FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type, at 56,138 to 56,815
_0055
Psyr_0056: Psyr_0056 - Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ, at 56,893 to 57,393
_0056
Psyr_0057: Psyr_0057 - conserved hypothetical protein, at 57,384 to 57,536
_0057
Psyr_0058: Psyr_0058 - Disulfide bond formation protein DsbB, at 57,541 to 58,068
_0058
Group
Condition
Psyr
_0054
Psyr
_0055
Psyr
_0056
Psyr
_0057
Psyr
_0058
stress
KB with Conessine 10 mM
+0.1
-0.4
-1.4
-0.4
+0.0
stress
KB with Totarol 10 mM
-0.5
+0.1
-1.1
-0.3
-0.2
stress
KB with Emodin 10 mM
+0.0
-0.0
-1.4
-0.3
-0.2
stress
KB with Rotenone 0.25 mg/ml
-0.3
-0.0
-0.9
-0.2
-0.2
stress
KB with Avocadyne 10 mM
+0.2
-0.1
-1.2
-0.4
-0.1
in planta
epiphytic; Lima bean
-0.1
+0.0
-0.8
-0.6
-0.1
stress
KB with Prenyletin 10 mM
+0.1
-0.1
-0.9
-0.3
-0.3
stress
KB with Sclareolide 10 mM
+0.2
-0.4
-0.9
-0.3
-0.0
stress
KB with Piperic 10 mM
+0.0
+0.1
-1.2
-0.2
-0.1
stress
KB with Erythromycin 6.25 ug/ml
+0.1
-0.4
-0.9
-0.0
-0.1
in planta
Green bean; epiphytic
-0.4
+0.0
-0.8
-0.3
+0.1
stress
KB with 4-hydroxychalcone 10 mM
+0.1
-0.2
-0.9
-0.2
-0.2
stress
KB with Lupeol 10 mM
+0.1
-0.1
-1.2
-0.1
-0.0
stress
KB with Oxedrine 10 mM
+0.1
-0.0
-1.0
+0.1
-0.4
stress
KB with Solanesol 10 mM
+0.2
-0.2
-1.1
-0.1
-0.0
stress
KB with Palmatine chloride 10 mM
+0.3
+0.1
-1.2
-0.4
-0.0
stress
KB with Harmol 10 mM
-0.1
-0.1
-1.0
-0.1
+0.2
kb
KB
+0.2
+0.0
-1.1
-0.0
-0.1
stress
KB with Nonanoic 10 mM
+0.3
-0.1
-1.1
+0.1
-0.0
stress
KB with Mitomycin C 0.05 ug/ml
-0.5
-0.3
-0.2
+0.6
-0.4
stress
KB with Chaulmoogric 10 mM
+0.3
-0.1
-1.0
-0.1
+0.2
stress
KB with Chrysophanol 10 mM
+0.2
+0.3
-1.0
-0.1
-0.0
stress
KB with Anethole 10 mM
+0.3
+0.2
-0.8
-0.2
-0.1
stress
KB with Lawsone 10 mM
+0.3
-0.0
-0.8
+0.2
-0.2
in planta
apoplastic; Green bean; 6 days
+0.1
+0.2
-0.7
-0.3
+0.1
stress
KB with Avocatin A 10 mM
+0.3
+0.2
-0.5
-0.5
+0.0
stress
KB with Diallyl sulfide 10 mM
+0.4
+0.4
-0.9
-0.1
-0.1
in planta
apoplastic, chopping recovery; Green bean
+0.1
+0.1
-0.6
+0.4
-0.2
stress
KB with Palmatine 10 mM
+0.1
+0.4
-0.8
+0.2
+0.3
stress
KB with Carbenicillin 3.1 ug/ml
+0.3
-0.1
+0.5
+0.6
+0.0
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