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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_988 and PfGW456L13_989 are separated by 3 nucleotides
PfGW456L13_989 and PfGW456L13_990 are separated by 50 nucleotides
PfGW456L13_990 and PfGW456L13_991 overlap by 1 nucleotides
PfGW456L13_991 and PfGW456L13_992 overlap by 8 nucleotides
PfGW456L13_988 - FIG229276: Transcriptional regulator, AraC family, at 1,103,221 to 1,104,060
_988
PfGW456L13_989 - Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase, at 1,104,064 to 1,105,068
_989
PfGW456L13_990 - Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-), at 1,105,119 to 1,105,730
_990
PfGW456L13_991 - FIG015287: Zinc protease, at 1,105,730 to 1,107,220
_991
PfGW456L13_992 - FIG015547: peptidase, M16 family, at 1,107,213 to 1,108,568
_992
Group
Condition
PfGW456L13
_988
PfGW456L13
_989
PfGW456L13
_990
PfGW456L13
_991
PfGW456L13
_992
carbon source
Trisodium citrate (C)
-1.4
-0.4
-6.0
-0.5
-0.3
carbon source
octanoate (C)
-0.0
-0.1
-2.7
-0.9
-1.9
carbon source
D-Serine (C)
-0.3
+0.1
-3.3
-0.6
-0.5
stress
Lomefloxacin 0.0004 mM
-0.0
-0.1
-2.0
-0.9
-1.1
stress
nitrate 200 mM
-0.0
-0.0
-2.3
-0.5
-0.8
carbon source
Putrescine (C)
-0.3
+0.2
-3.2
-0.0
-0.1
carbon source
L-Arabinose (C)
+0.3
-0.1
-3.4
+0.1
-0.1
carbon source
L-Phenylalanine (C)
-0.1
+0.0
-2.7
-0.1
-0.3
carbon source
D-Gluconic Acid (C)
-0.7
+0.0
-1.1
-0.3
-1.0
carbon source
L-Arabinose (C)
+0.0
+0.0
-2.4
-0.1
-0.6
carbon source
L-Tryptophan (C)
-0.2
+0.0
-2.5
+0.0
-0.2
carbon source
L-Phenylalanine (C)
-0.1
-0.0
-2.1
-0.1
-0.5
carbon source
L-Asparagine (C)
-0.4
+0.0
-1.9
-0.1
-0.4
carbon source
D-Alanine (C)
-0.1
-0.0
-1.9
-0.3
-0.4
carbon source
L-Alanine (C)
-0.5
+0.3
-1.6
-0.4
-0.4
stress
Fusidic 0.03 mg/ml
-0.3
-0.2
-1.7
-0.1
-0.3
carbon source
D-Serine (C)
-0.4
+0.1
-1.8
-0.1
-0.2
nitrogen source
L-Threonine (N)
-0.4
-0.1
-1.6
-0.1
-0.3
carbon source
D-Fructose (C)
-0.6
+0.1
-1.9
+0.1
-0.2
carbon source
L-Glutamine (C)
-0.6
-0.3
-1.6
-0.1
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.0
+0.0
-2.2
-0.1
-0.1
carbon source
L-Malic (C)
-1.0
-0.0
-0.7
-0.4
-0.3
stress
Chloride 400 mM
+0.1
+0.0
-1.6
-0.3
-0.5
carbon source
D-Fructose (C)
-0.4
+0.3
-1.4
+0.0
-0.7
carbon source
L-Valine (C)
+0.2
-0.1
-1.9
-0.1
-0.3
carbon source
D-Alanine (C)
-0.2
+0.1
-1.3
-0.5
-0.5
carbon source
L-Histidine (C)
-0.4
+0.2
-1.7
-0.1
-0.2
carbon source
L-Malic (C)
+0.2
+0.1
-1.5
-0.4
-0.3
carbon source
D-Gluconic Acid (C)
+0.6
-0.1
-1.2
-0.6
-0.5
carbon source
D-Galactose (C)
-0.3
+0.1
-1.4
-0.2
+0.3
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