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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_912 and PfGW456L13_913 are separated by 245 nucleotides
PfGW456L13_913 and PfGW456L13_914 are separated by 128 nucleotides
PfGW456L13_914 and PfGW456L13_915 are separated by 363 nucleotides
PfGW456L13_915 and PfGW456L13_916 are separated by 412 nucleotides
PfGW456L13_912 - Acetylornithine deacetylase (EC 3.5.1.16), at 1,020,915 to 1,022,063
_912
PfGW456L13_913 - N-acetylglutamate synthase (EC 2.3.1.1), at 1,022,309 to 1,023,607
_913
PfGW456L13_914 - Taurine-binding periplasmic protein TauA, at 1,023,736 to 1,024,725
_914
PfGW456L13_915 - Outer membrane porin, OprD family, at 1,025,089 to 1,026,420
_915
PfGW456L13_916 - Outer membrane porin, OprD family, at 1,026,833 to 1,028,173
_916
Group
Condition
PfGW456L13
_912
PfGW456L13
_913
PfGW456L13
_914
PfGW456L13
_915
PfGW456L13
_916
carbon source
L-Histidine (C)
-0.1
-5.6
+0.1
-0.1
-0.2
carbon source
succinate (C)
-0.2
-5.5
-0.1
-0.1
-0.0
carbon source
L-Valine (C)
-0.2
-5.7
+0.1
-0.1
-0.0
nitrogen source
nitrate (N)
-0.4
-5.1
-0.2
-0.0
-0.1
carbon source
L-Malic (C)
+0.1
-5.7
-0.0
-0.0
-0.1
nitrogen source
Glycine (N)
+0.1
-5.3
-0.2
-0.1
+0.0
carbon source
Glycerol (C)
-0.4
-5.5
+0.1
+0.1
+0.1
carbon source
L-Valine (C)
-0.3
-5.3
+0.2
-0.0
-0.1
nitrogen source
L-Isoleucine (N)
-0.2
-5.1
-0.2
+0.1
-0.1
carbon source
D-Mannose (C)
+0.0
-5.5
+0.1
-0.0
-0.0
carbon source
L-Asparagine (C)
+0.0
-5.6
+0.1
+0.0
-0.0
nitrogen source
L-Lysine (N)
+0.2
-4.8
-0.5
-0.1
-0.3
nitrogen source
L-Phenylalanine (N)
+0.1
-5.5
+0.0
-0.0
-0.0
carbon source
L-Lactate (C)
-0.2
-5.1
+0.2
+0.0
-0.3
nitrogen source
L-Proline (N)
+0.3
-5.2
-0.4
-0.0
-0.0
carbon source
L-Tryptophan (C)
+0.2
-5.3
+0.3
-0.1
-0.3
carbon source
Trisodium citrate (C)
-0.6
-5.1
+0.6
-0.1
-0.0
carbon source
D,L-Lactate (C)
+0.2
-5.2
-0.2
-0.1
-0.1
carbon source
L-Phenylalanine (C)
+0.0
-5.3
+0.2
-0.0
-0.1
carbon source
D-Fructose (C)
+0.2
-5.4
+0.1
-0.1
-0.0
nitrogen source
L-Glutamine (N)
+0.2
-5.0
-0.2
-0.0
-0.1
carbon source
L-Glutamine (C)
+0.2
-5.4
+0.1
-0.0
-0.1
carbon source
L-Asparagine (C)
-0.2
-5.4
+0.3
+0.0
+0.1
carbon source
L-Arabinose (C)
+0.3
-5.5
+0.4
-0.1
+0.0
carbon source
D-Mannose (C)
+0.1
-5.1
+0.3
-0.0
-0.1
carbon source
D-Lactate (C)
+0.2
-5.1
+0.2
-0.0
-0.1
carbon source
D-Serine (C)
-0.0
-5.1
+0.3
+0.1
-0.0
carbon source
D-Galactose (C)
+0.1
-5.1
+0.3
+0.1
+0.0
carbon source
L-Tryptophan (C)
+0.3
-4.6
+0.5
-0.1
-0.2
carbon source
D-Glucose (C)
+0.4
-4.9
+0.5
+0.1
+0.1
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