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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_904 and PfGW456L13_905 are separated by 194 nucleotides
PfGW456L13_905 and PfGW456L13_906 are separated by 68 nucleotides
PfGW456L13_906 and PfGW456L13_907 are separated by 8 nucleotides
PfGW456L13_907 and PfGW456L13_908 are separated by 84 nucleotides
PfGW456L13_904 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 1,011,571 to 1,014,444
_904
PfGW456L13_905 - Ribonucleotide reductase, alpha subunit, at 1,014,639 to 1,014,956
_905
PfGW456L13_906 - Putative activity regulator of membrane protease YbbK, at 1,015,025 to 1,015,474
_906
PfGW456L13_907 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 1,015,483 to 1,016,403
_907
PfGW456L13_908 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,016,488 to 1,018,272
_908
Group
Condition
PfGW456L13
_904
PfGW456L13
_905
PfGW456L13
_906
PfGW456L13
_907
PfGW456L13
_908
carbon source
a-Ketoglutaric (C)
+0.0
-0.5
-0.6
-0.3
-0.3
nitrogen source
Gly-Glu (N)
-0.0
-0.2
-0.8
-0.6
+0.1
carbon source
Glycerol (C)
+0.0
-0.3
-1.0
+0.1
-0.1
nitrogen source
L-Isoleucine (N)
-0.0
-0.1
-0.5
-0.1
-0.4
nitrogen source
Gly-DL-Asp (N)
-0.1
-0.2
-0.2
-0.4
-0.0
lb
LB
+0.0
-0.2
-0.4
-0.4
+0.1
carbon source
L-Malic (C)
-0.0
+0.1
-0.7
-0.3
+0.1
nitrogen source
Cytosine (N)
-0.1
+0.1
-0.6
-0.1
+0.0
carbon source
D-Fructose (C)
-0.1
+0.1
-1.0
+0.2
+0.2
carbon source
Putrescine (C)
+0.2
-0.6
-0.0
+0.4
-0.4
carbon source
D-Lactate (C)
-0.0
-0.3
-0.3
+0.2
+0.1
carbon source
L-Glutamine (C)
+0.1
-0.3
-0.3
+0.4
-0.0
nitrogen source
L-Tryptophan (N)
-0.1
+0.2
-0.5
+0.2
+0.1
carbon source
L-Histidine (C)
-0.1
+0.4
-0.4
-0.2
+0.2
carbon source
a-Ketoglutaric (C)
+0.1
-0.4
-0.2
+0.4
+0.2
carbon source
D-Gluconic Acid (C)
+0.0
-0.4
+0.6
-0.1
-0.1
carbon source
D-Lactate (C)
-0.1
-0.3
+0.3
+0.2
+0.1
carbon source
D-Galactose (C)
+0.1
+0.1
+0.5
-0.2
-0.1
nitrogen source
D-Alanine (N)
+0.2
-0.4
+0.5
+0.2
-0.0
stress
Vancomycin 0.25 mg/ml
+0.0
-0.1
-0.2
-0.2
+0.9
stress
Fusidic 0.08 mg/ml
+0.0
+0.0
+0.6
-0.2
+0.2
lb
LB
-0.1
-0.1
+0.6
+0.1
+0.1
carbon source
L-Tryptophan (C)
-0.1
-0.0
+0.4
+0.3
+0.1
carbon source
D-Gluconic Acid (C)
+0.4
-0.2
+0.5
+0.0
+0.2
stress
Vancomycin 0.125 mg/ml
-0.0
-0.1
+0.5
+0.1
+0.4
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.1
+0.1
+0.7
-0.0
+0.0
nitrogen source
D-Serine (N)
-0.0
+0.2
+0.7
+0.1
+0.4
stress
Vancomycin 0.5 mg/ml
-0.0
-0.5
+0.2
+0.4
+1.3
carbon source
L-Arabinose (C)
+0.0
+0.1
+0.8
+0.0
+0.5
carbon source
octanoate (C)
+0.2
+0.0
-0.4
+0.3
+1.5
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