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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_902 and PfGW456L13_903 are separated by 48 nucleotides
PfGW456L13_903 and PfGW456L13_904 are separated by 228 nucleotides
PfGW456L13_904 and PfGW456L13_905 are separated by 194 nucleotides
PfGW456L13_905 and PfGW456L13_906 are separated by 68 nucleotides
PfGW456L13_902 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 1,009,828 to 1,010,910
_902
PfGW456L13_903 - Glycine cleavage system H protein, at 1,010,959 to 1,011,342
_903
PfGW456L13_904 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 1,011,571 to 1,014,444
_904
PfGW456L13_905 - Ribonucleotide reductase, alpha subunit, at 1,014,639 to 1,014,956
_905
PfGW456L13_906 - Putative activity regulator of membrane protease YbbK, at 1,015,025 to 1,015,474
_906
Group
Condition
PfGW456L13
_902
PfGW456L13
_903
PfGW456L13
_904
PfGW456L13
_905
PfGW456L13
_906
carbon source
a-Ketoglutaric (C)
+0.2
-0.8
+0.0
-0.5
-0.6
carbon source
D-Lactate (C)
-0.5
-0.5
-0.0
-0.3
-0.3
nitrogen source
Gly-Glu (N)
-0.1
-0.4
-0.0
-0.2
-0.8
carbon source
octanoate (C)
-1.8
+0.5
+0.2
+0.0
-0.4
carbon source
Glycerol (C)
-0.1
+0.0
+0.0
-0.3
-1.0
carbon source
L-Tryptophan (C)
-1.8
+1.0
-0.0
-0.2
-0.2
carbon source
a-Ketoglutaric (C)
+0.4
-1.0
+0.1
-0.4
-0.2
lb
LB
+0.1
-0.5
+0.0
-0.2
-0.4
stress
Vancomycin 0.5 mg/ml
+0.1
-0.8
-0.0
-0.5
+0.2
carbon source
L-Phenylalanine (C)
-0.5
+0.2
+0.0
-0.1
-0.2
carbon source
D-Fructose (C)
+0.3
+0.2
-0.1
+0.1
-1.0
carbon source
L-Tryptophan (C)
-1.6
+0.9
-0.1
-0.0
+0.4
carbon source
L-Alanine (C)
-0.6
+0.4
-0.2
-0.1
+0.2
carbon source
L-Valine (C)
-0.8
+0.6
+0.0
-0.1
+0.1
carbon source
L-Valine (C)
-0.7
+0.5
-0.1
-0.2
+0.3
carbon source
L-Alanine (C)
-0.5
+0.6
-0.0
-0.1
-0.0
carbon source
Putrescine (C)
-0.3
+0.5
+0.2
-0.6
-0.0
carbon source
L-Histidine (C)
-0.3
+0.2
-0.1
+0.4
-0.4
nitrogen source
D-Alanine (N)
-0.3
-0.0
+0.2
-0.4
+0.5
carbon source
D-Gluconic Acid (C)
-0.1
-0.0
+0.0
-0.4
+0.6
stress
Aluminum chloride 5 mM
-0.4
+0.4
-0.1
+0.1
+0.3
stress
nitrate 200 mM
-0.6
+0.6
-0.1
+0.0
+0.3
nitrogen source
L-Valine (N)
-0.4
+0.3
+0.1
+0.2
+0.1
nitrogen source
L-Arginine (N)
-0.3
+0.4
-0.1
-0.0
+0.3
carbon source
Glycerol (C)
+0.3
-0.3
+0.2
-0.3
+0.3
carbon source
D-Gluconic Acid (C)
+0.1
-0.3
+0.4
-0.2
+0.5
stress
Aluminum chloride 2.5 mM
-0.3
+0.6
-0.1
-0.0
+0.2
stress
Paraquat dichloride 0.032 mg/ml
-0.4
+0.3
+0.1
+0.2
+0.4
carbon source
L-Arabinose (C)
+0.1
-0.3
+0.0
+0.1
+0.8
nitrogen source
D-Serine (N)
-0.3
+0.1
-0.0
+0.2
+0.7
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