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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_890 and PfGW456L13_891 are separated by 195 nucleotides
PfGW456L13_891 and PfGW456L13_892 are separated by 35 nucleotides
PfGW456L13_892 and PfGW456L13_893 are separated by 295 nucleotides
PfGW456L13_893 and PfGW456L13_894 overlap by 4 nucleotides
PfGW456L13_890 - FIG006231: RNA-binding protein, at 999,663 to 1,000,115
_890
PfGW456L13_891 - FIG00953390: hypothetical protein, at 1,000,311 to 1,000,466
_891
PfGW456L13_892 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 1,000,502 to 1,001,107
_892
PfGW456L13_893 - Z-ring-associated protein ZapA, at 1,001,403 to 1,001,720
_893
PfGW456L13_894 - FIG019278: hypothetical protein, at 1,001,717 to 1,001,926
_894
Group
Condition
PfGW456L13
_890
PfGW456L13
_891
PfGW456L13
_892
PfGW456L13
_893
PfGW456L13
_894
nitrogen source
L-Lysine (N)
-0.0
-0.0
-5.2
-0.4
-0.1
carbon source
a-Ketoglutaric (C)
-1.2
-1.0
-1.0
-2.1
+0.0
carbon source
L-Glutamine (C)
-0.0
+0.0
-5.0
+0.0
-0.1
nitrogen source
Putrescine (N)
-0.3
-0.4
-3.5
-0.4
+0.1
nitrogen source
nitrate (N)
-0.1
+0.1
-4.7
+0.1
+0.3
stress
nitrate 200 mM
-1.3
-0.8
-0.0
-1.4
-0.6
nitrogen source
Cytosine (N)
-0.3
+0.1
-3.8
-0.2
+0.1
nitrogen source
NAG (N)
-0.0
+0.0
-3.8
+0.1
-0.2
nitrogen source
Ammonium chloride (N)
-0.4
-0.2
-3.4
+0.2
+0.0
nitrogen source
Glycine (N)
-0.0
-0.1
-3.6
-0.0
+0.2
nitrogen source
L-Histidine (N)
+0.3
-0.2
-3.6
+0.2
-0.0
carbon source
L-Glutamine (C)
+0.5
+0.8
-4.4
-0.0
+0.0
nitrogen source
D-Serine (N)
+0.1
-0.1
-2.9
+0.3
-0.3
nitrogen source
L-Threonine (N)
+0.2
+0.2
-2.6
-0.1
-0.4
nitrogen source
Uridine (N)
+0.0
-0.1
-2.6
+0.1
+0.0
nitrogen source
L-Tryptophan (N)
-0.2
-0.0
-2.3
-0.0
-0.1
nitrogen source
L-Arginine (N)
-0.4
-0.5
-1.6
+0.2
-0.2
nitrogen source
L-Glutamine (N)
+0.2
-0.1
-2.0
-0.3
-0.0
nitrogen source
D-Alanine (N)
-0.0
-0.2
-2.0
+0.0
-0.1
nitrogen source
L-Serine (N)
+0.1
+0.2
-2.2
+0.0
-0.3
carbon source
D-Glucosamine Hydrochloride (C)
+0.4
-0.9
-0.7
-0.1
-0.5
carbon source
Tween 20 (C)
+0.1
-0.0
-2.0
+0.3
-0.0
carbon source
D-Fructose (C)
+0.3
-0.0
-1.4
+0.3
-0.2
carbon source
D-Galactose (C)
-0.0
-0.2
-0.7
+0.6
-0.6
carbon source
D-Fructose (C)
+0.6
+0.1
-1.2
-0.0
-0.4
carbon source
Glycerol (C)
+0.3
-0.6
-0.9
+0.5
+0.1
carbon source
D-Gluconic Acid (C)
-0.3
+0.3
-1.3
+0.7
+0.0
carbon source
a-Ketoglutaric (C)
+0.8
+0.4
-0.6
+0.4
+0.0
stress
Lomefloxacin 0.0004 mM
+0.7
+0.7
+0.0
+0.8
-0.2
carbon source
octanoate (C)
+0.1
+1.0
+0.2
+1.8
-1.0
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