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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_858 and PfGW456L13_859 overlap by 4 nucleotides
PfGW456L13_859 and PfGW456L13_860 are separated by 263 nucleotides
PfGW456L13_860 and PfGW456L13_861 are separated by 177 nucleotides
PfGW456L13_861 and PfGW456L13_862 are separated by 60 nucleotides
PfGW456L13_858 - Uroporphyrinogen-III synthase (EC 4.2.1.75), at 964,293 to 965,456
_858
PfGW456L13_859 - Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 965,453 to 966,691
_859
PfGW456L13_860 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 966,955 to 967,506
_860
PfGW456L13_861 - Regulator of sigma D, at 967,684 to 968,142
_861
PfGW456L13_862 - Macrophage infectivity potentiator, at 968,203 to 968,868
_862
Group
Condition
PfGW456L13
_858
PfGW456L13
_859
PfGW456L13
_860
PfGW456L13
_861
PfGW456L13
_862
nitrogen source
L-Proline (N)
-2.2
-2.1
+0.1
+0.2
+0.1
stress
Dimethyl Sulfoxide 7.5 vol%
-1.6
-1.5
-0.2
-0.2
-0.2
carbon source
octanoate (C)
-1.0
-0.3
-0.3
-0.3
-1.1
control
LB control
-1.4
-0.4
-0.0
-0.8
-0.1
control
LB control
-1.1
-0.6
-0.0
-0.6
-0.2
control
LB control
-1.0
-0.1
-0.1
-0.8
-0.2
stress
A22 0.04 mg/ml
-1.3
-0.7
+0.0
-0.1
-0.1
lb
LB
-1.2
-0.3
+0.0
-0.4
-0.2
stress
nitrate 200 mM
-0.9
-0.8
-0.2
+0.1
-0.2
carbon source
L-Malic (C)
-0.5
-0.3
-0.6
+0.1
-0.6
nitrogen source
L-Aspartic Acid (N)
-1.0
-1.0
-0.2
+0.2
+0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.1
-1.0
-0.5
-0.1
-0.1
nitrogen source
L-Asparagine (N)
-0.9
-0.7
-0.2
+0.1
+0.1
nitrogen source
L-Citrulline (N)
-0.8
-0.9
-0.2
+0.2
+0.1
stress
Paraquat dichloride 0.032 mg/ml
-0.9
-0.7
+0.0
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
-0.8
+0.2
-0.6
-0.2
+0.1
stress
Nickel (II) chloride 1 mM
-0.9
-0.7
-0.1
+0.3
+0.1
nitrogen source
Putrescine (N)
-0.6
-0.7
-0.4
+0.4
+0.1
nitrogen source
L-Leucine (N)
-0.9
-0.4
-0.1
+0.1
+0.3
carbon source
D-Mannose (C)
-1.2
+0.2
+0.1
+0.3
-0.1
carbon source
D-Lactate (C)
-0.1
-1.1
+0.3
+0.1
+0.2
carbon source
Putrescine (C)
-0.5
-0.7
+0.1
+0.4
+0.4
carbon source
D,L-Lactate (C)
-0.5
+0.2
-0.4
+0.1
+0.5
carbon source
D-Fructose (C)
+0.7
+0.4
+0.0
+0.2
-0.6
carbon source
a-Ketoglutaric (C)
+0.9
+0.3
-0.3
+0.5
+0.1
carbon source
L-Valine (C)
+0.9
+0.5
-0.1
+0.1
-0.0
carbon source
L-Tryptophan (C)
+1.1
+1.0
-0.7
+0.3
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.8
+0.5
+0.2
+0.2
-0.1
carbon source
L-Tryptophan (C)
+1.1
+0.8
+0.1
+0.0
-0.2
carbon source
a-Ketoglutaric (C)
+1.2
+0.3
+0.5
-0.0
+0.0
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