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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_795 and PfGW456L13_796 are separated by 101 nucleotides
PfGW456L13_796 and PfGW456L13_797 are separated by 5 nucleotides
PfGW456L13_797 and PfGW456L13_798 are separated by 135 nucleotides
PfGW456L13_798 and PfGW456L13_799 are separated by 124 nucleotides
PfGW456L13_795 - hypothetical protein, at 896,381 to 896,500
_795
PfGW456L13_796 - Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), at 896,602 to 897,057
_796
PfGW456L13_797 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 897,063 to 898,271
_797
PfGW456L13_798 - DNA repair protein RadC, at 898,407 to 899,081
_798
PfGW456L13_799 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 899,206 to 900,792
_799
Group
Condition
PfGW456L13
_795
PfGW456L13
_796
PfGW456L13
_797
PfGW456L13
_798
PfGW456L13
_799
carbon source
D-Glucose (C)
-3.3
N.D.
N.D.
-0.3
-0.0
carbon source
D-Lactate (C)
-2.1
N.D.
N.D.
-0.2
-0.2
carbon source
L-Lactate (C)
-2.5
N.D.
N.D.
+0.2
+0.2
carbon source
D-Fructose (C)
-1.6
N.D.
N.D.
-0.3
-0.1
carbon source
L-Arabinose (C)
-1.4
N.D.
N.D.
-0.0
-0.2
nitrogen source
D-Serine (N)
-0.9
N.D.
N.D.
-0.4
-0.2
nitrogen source
Putrescine (N)
-1.5
N.D.
N.D.
+0.2
-0.1
carbon source
L-Malic (C)
-1.2
N.D.
N.D.
+0.1
+0.0
carbon source
L-Glutamine (C)
-1.0
N.D.
N.D.
-0.1
-0.0
carbon source
D-Galactose (C)
-0.5
N.D.
N.D.
-0.7
+0.2
nitrogen source
L-Isoleucine (N)
-1.0
N.D.
N.D.
+0.2
+0.0
stress
Cephalothin 3 mg/ml
-1.1
N.D.
N.D.
+0.2
+0.0
carbon source
D-Gluconic Acid (C)
-1.1
N.D.
N.D.
+0.2
+0.1
carbon source
octanoate (C)
-1.5
N.D.
N.D.
+0.3
+0.4
stress
Vancomycin 0.125 mg/ml
-0.9
N.D.
N.D.
+0.2
-0.1
stress
Vancomycin 0.5 mg/ml
-0.7
N.D.
N.D.
+0.3
-0.1
stress
Paraquat dichloride 0.032 mg/ml
+0.6
N.D.
N.D.
+0.0
-0.3
carbon source
L-Valine (C)
+1.0
N.D.
N.D.
+0.0
-0.2
nitrogen source
nitrate (N)
+1.0
N.D.
N.D.
+0.1
-0.2
carbon source
Tween 20 (C)
+0.8
N.D.
N.D.
+0.1
-0.1
stress
Cobalt chloride 0.16 mM
+0.9
N.D.
N.D.
+0.1
-0.1
carbon source
L-Tryptophan (C)
+0.9
N.D.
N.D.
+0.2
-0.2
lb
LB
+1.0
N.D.
N.D.
-0.1
+0.1
carbon source
a-Ketoglutaric (C)
+1.0
N.D.
N.D.
+0.2
-0.1
nitrogen source
Ammonium chloride (N)
+0.8
N.D.
N.D.
+0.3
-0.0
carbon source
L-Asparagine (C)
+1.0
N.D.
N.D.
+0.2
+0.0
carbon source
D,L-Lactate (C)
+0.8
N.D.
N.D.
+0.3
+0.2
carbon source
Glycerol (C)
+1.0
N.D.
N.D.
+0.2
+0.1
nitrogen source
L-Glutamine (N)
+1.2
N.D.
N.D.
+0.2
+0.1
carbon source
D-Serine (C)
+1.2
N.D.
N.D.
+0.5
-0.0
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