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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_767 and PfGW456L13_768 are separated by 18 nucleotides
PfGW456L13_768 and PfGW456L13_769 are separated by 194 nucleotides
PfGW456L13_769 and PfGW456L13_770 are separated by 551 nucleotides
PfGW456L13_770 and PfGW456L13_771 are separated by 140 nucleotides
PfGW456L13_767 - Rubredoxin, at 871,598 to 871,768
_767
PfGW456L13_768 - Rubredoxin-NAD(+) reductase (EC 1.18.1.1), at 871,787 to 872,935
_768
PfGW456L13_769 - DNA-binding protein HU-alpha, at 873,130 to 873,405
_769
PfGW456L13_770 - Superfamily II DNA and RNA helicases, at 873,957 to 874,328
_770
PfGW456L13_771 - Predicted signal transduction protein, at 874,469 to 875,872
_771
Group
Condition
PfGW456L13
_767
PfGW456L13
_768
PfGW456L13
_769
PfGW456L13
_770
PfGW456L13
_771
carbon source
D-Lactate (C)
-1.0
+0.0
-4.7
-0.9
-0.4
carbon source
succinate (C)
-0.4
+0.0
-4.7
+0.5
-0.4
carbon source
Trisodium citrate (C)
+0.1
-0.2
-2.6
-2.0
-0.1
carbon source
D-Lactate (C)
-0.9
-0.2
-3.5
+0.6
-0.6
carbon source
L-Lactate (C)
+0.1
+0.2
-4.9
+0.5
-0.3
carbon source
L-Arabinose (C)
-0.2
-0.0
-3.6
+0.7
-0.2
nitrogen source
L-Proline (N)
-1.4
-0.2
+0.2
-0.8
-0.1
carbon source
D-Gluconic Acid (C)
-1.0
+0.0
+0.8
-1.8
-0.3
nitrogen source
L-Phenylalanine (N)
+0.1
-0.1
-1.8
-0.3
-0.0
carbon source
L-Malic (C)
-0.2
-0.1
-1.9
+0.3
-0.0
stress
Aluminum chloride 2.5 mM
+0.1
+0.2
-1.0
-0.6
-0.5
carbon source
L-Histidine (C)
+0.0
-0.3
-1.4
-0.4
+0.3
carbon source
L-Phenylalanine (C)
-0.7
+0.0
-1.0
+0.1
+0.1
carbon source
L-Glutamine (C)
-0.6
-0.2
+0.5
-1.0
-0.0
nitrogen source
Gly-DL-Asp (N)
-0.1
-0.3
-1.8
+1.1
+0.1
carbon source
L-Alanine (C)
-0.2
-0.0
-1.3
+0.4
+0.2
stress
Chloride 400 mM
-0.6
+0.2
+0.5
-0.6
-0.3
control
LB control
-0.3
-0.2
+0.8
-1.0
-0.1
stress
Aluminum chloride 5 mM
-0.3
+0.3
+0.3
-0.8
-0.1
carbon source
L-Malic (C)
+0.2
-0.2
+0.9
-1.4
-0.1
stress
Lomefloxacin 0.0004 mM
+0.6
+0.3
+0.2
-0.6
-0.2
carbon source
L-Arabinose (C)
+0.3
-0.1
+1.1
-0.7
-0.2
carbon source
D-Alanine (C)
-0.5
-0.0
+0.4
+0.9
-0.2
carbon source
D-Glucose (C)
-0.6
+0.2
+0.7
+0.5
-0.0
carbon source
a-Ketoglutaric (C)
-0.1
-0.2
+0.7
+0.9
-0.4
carbon source
a-Ketoglutaric (C)
-0.1
+0.2
+1.9
-0.9
-0.2
stress
Vancomycin 0.5 mg/ml
+0.5
+0.4
+0.7
-0.2
-0.3
stress
Vancomycin 0.25 mg/ml
+0.4
+0.1
+0.7
+0.4
-0.2
stress
D-Cycloserine 0.125 mg/ml
+0.0
+0.5
+1.4
+0.2
-0.2
carbon source
octanoate (C)
+1.5
-0.1
+1.3
-0.8
+0.3
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