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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_74 and PfGW456L13_75 are separated by 20 nucleotides
PfGW456L13_75 and PfGW456L13_76 are separated by 192 nucleotides
PfGW456L13_76 and PfGW456L13_77 are separated by 111 nucleotides
PfGW456L13_77 and PfGW456L13_78 are separated by 156 nucleotides
PfGW456L13_74 - Copper metallochaperone, bacterial analog of Cox17 protein, at 84,488 to 84,967
_74
PfGW456L13_75 - Putative multicopper oxidases, at 84,988 to 85,440
_75
PfGW456L13_76 - Outer membrane receptor proteins, mostly Fe transport, at 85,633 to 87,750
_76
PfGW456L13_77 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 87,862 to 89,241
_77
PfGW456L13_78 - ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component, at 89,398 to 90,186
_78
Group
Condition
PfGW456L13
_74
PfGW456L13
_75
PfGW456L13
_76
PfGW456L13
_77
PfGW456L13
_78
carbon source
a-Ketoglutaric (C)
N.D.
-3.0
-0.3
-0.0
-0.4
carbon source
D-Glucose (C)
N.D.
-1.2
+0.1
-0.0
-1.4
carbon source
D-Fructose (C)
N.D.
-2.7
+0.0
+0.2
+0.3
carbon source
a-Ketoglutaric (C)
N.D.
+0.5
+0.1
+0.6
-3.1
carbon source
D-Gluconic Acid (C)
N.D.
+0.0
+0.1
+0.1
-2.2
carbon source
L-Arabinose (C)
N.D.
-1.8
+0.1
+0.0
-0.2
carbon source
D,L-Lactate (C)
N.D.
-1.1
+0.0
+0.3
-1.1
carbon source
Trisodium citrate (C)
N.D.
-0.8
-0.2
-0.1
-0.3
carbon source
D-Gluconic Acid (C)
N.D.
-1.1
-0.1
+0.3
-0.5
nitrogen source
Ammonium chloride (N)
N.D.
-0.9
+0.2
-0.1
-0.2
carbon source
D-Alanine (C)
N.D.
-1.3
+0.0
-0.0
+0.4
carbon source
L-Arabinose (C)
N.D.
-0.9
+0.1
+0.1
-0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
N.D.
-0.9
-0.0
-0.2
+0.6
carbon source
D-Galactose (C)
N.D.
+0.2
+0.1
+0.4
-0.9
carbon source
D-Alanine (C)
N.D.
-0.9
-0.1
+0.3
+0.5
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
+0.3
+0.1
+0.1
-0.8
carbon source
L-Valine (C)
N.D.
-1.0
+0.1
+0.2
+0.6
stress
nitrite 10 mM
N.D.
+0.8
-0.0
-0.1
-0.4
carbon source
L-Lactate (C)
N.D.
-0.6
+0.2
+0.2
+0.6
nitrogen source
Uridine (N)
N.D.
-0.2
+0.2
+0.0
+0.8
carbon source
L-Malic (C)
N.D.
-0.7
+0.2
+0.3
+1.1
nitrogen source
Gly-DL-Asp (N)
N.D.
+0.0
+0.2
-0.2
+0.9
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
-0.2
+0.0
+0.2
+1.0
carbon source
octanoate (C)
N.D.
-0.5
+0.0
+0.4
+1.0
carbon source
succinate (C)
N.D.
+0.5
-0.1
+0.2
+0.6
carbon source
D-Galactose (C)
N.D.
-0.1
+0.3
+0.3
+0.8
carbon source
Putrescine (C)
N.D.
+0.7
+0.1
-0.0
+0.6
stress
Cisplatin 0.0125 mg/ml
N.D.
+0.5
-0.0
+0.1
+0.7
nitrogen source
Gly-Glu (N)
N.D.
+1.0
+0.2
+0.1
+0.4
carbon source
D-Lactate (C)
N.D.
+0.8
+0.2
+0.5
+0.3
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