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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_714 and PfGW456L13_715 are separated by 27 nucleotides
PfGW456L13_715 and PfGW456L13_716 are separated by 4 nucleotides
PfGW456L13_716 and PfGW456L13_717 are separated by 26 nucleotides
PfGW456L13_717 and PfGW456L13_718 overlap by 39 nucleotides
PfGW456L13_714 - NADH:ubiquinone oxidoreductase 49 kD subunit 7, at 811,559 to 811,915
_714
PfGW456L13_715 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 811,943 to 812,914
_715
PfGW456L13_716 - FIG00957502: hypothetical protein, at 812,919 to 813,332
_716
PfGW456L13_717 - hypothetical protein, at 813,359 to 813,490
_717
PfGW456L13_718 - Pyridoxal kinase (EC 2.7.1.35), at 813,452 to 814,324
_718
Group
Condition
PfGW456L13
_714
PfGW456L13
_715
PfGW456L13
_716
PfGW456L13
_717
PfGW456L13
_718
carbon source
octanoate (C)
-0.4
-0.5
-1.2
-1.6
+0.4
carbon source
Glycerol (C)
-0.1
-0.2
+0.3
-0.3
-2.0
carbon source
a-Ketoglutaric (C)
-0.3
-0.8
+0.3
-1.2
+0.2
carbon source
L-Arabinose (C)
+0.1
-0.0
+0.7
-2.3
-0.2
carbon source
Glycerol (C)
+0.2
+0.3
+0.8
-0.9
-2.0
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.1
+0.1
-0.3
-1.0
-0.0
stress
Bacitracin 1 mg/ml
-0.1
-0.1
-0.5
-0.6
-0.1
carbon source
L-Glutamine (C)
-0.3
+0.0
-0.3
-0.1
-0.6
carbon source
D-Fructose (C)
-0.1
+0.1
-0.8
+0.2
-0.6
carbon source
D-Galactose (C)
+0.0
+0.1
+0.2
-0.2
-1.1
stress
Fusidic 0.03 mg/ml
+0.1
+0.1
-0.1
-1.0
-0.1
carbon source
D-Fructose (C)
+0.2
+0.1
-0.4
-0.9
+0.1
nitrogen source
L-Threonine (N)
-0.1
-0.0
-0.4
-0.5
+0.3
nitrogen source
L-Asparagine (N)
-0.3
+0.5
-0.2
-0.4
-0.0
carbon source
a-Ketoglutaric (C)
-0.3
-0.4
+0.2
+0.3
-0.2
carbon source
L-Malic (C)
+0.1
-0.3
-0.4
+0.3
+0.1
carbon source
L-Lactate (C)
-0.7
+0.1
+0.3
+0.3
-0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
+0.1
+0.2
-0.8
+0.1
nitrogen source
Putrescine (N)
-0.1
+0.2
+0.3
-0.8
+0.3
nitrogen source
L-Phenylalanine (N)
-0.2
+0.3
-0.1
+0.7
-0.4
stress
Chloride 400 mM
+0.0
-0.5
+0.1
+0.5
+0.2
carbon source
L-Histidine (C)
-0.3
+0.3
+0.5
-0.2
-0.0
nitrogen source
Ammonium chloride (N)
-0.4
-0.3
+0.3
+0.8
-0.1
carbon source
D-Glucose (C)
-0.2
+0.3
-0.1
+0.8
-0.4
carbon source
D-Galactose (C)
+0.1
+0.3
+0.4
+0.3
-0.7
carbon source
Trisodium citrate (C)
+0.1
+0.1
+0.5
+0.6
-0.5
carbon source
D-Serine (C)
-0.1
-0.3
-0.1
+1.1
+0.4
carbon source
D,L-Lactate (C)
+0.3
-0.1
-0.1
+1.2
-0.0
carbon source
L-Malic (C)
+0.2
+0.4
+0.8
+0.6
-0.4
carbon source
D-Lactate (C)
+0.3
+0.4
+0.5
+0.5
+0.1
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